Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KHDPMCMB_37 | 95767 | 96471 | WalR | 5.69e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| KHDPMCMB_84 | 62218 | 62024 | CspR | 3.04e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| KHDPMCMB_84 | 62218 | 62021 | CspA | 4.66e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KHDPMCMB_10 | 1 | 869 | rep28 | 869 / 936 | 100.00 | CP005948 |
| KHDPMCMB_47 | 5014 | 5916 | rep38 | 903 / 903 | 99.22 | CP005943 |
| KHDPMCMB_33 | 452 | 1407 | repUS64 | 959 / 954 | 81.02 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KHDPMCMB_6 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_8 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_10 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_16 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_17 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_21 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_22 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_23 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_24 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_25 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_26 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_27 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_28 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_29 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_30 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_31 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_32 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_33 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_34 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_35 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_36 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_37 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_38 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_39 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_40 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_41 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_42 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_43 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_44 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_45 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_47 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_48 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_49 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_50 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_55 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_56 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_58 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_59 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_60 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_61 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_63 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_66 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_67 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_68 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_71 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_73 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_74 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_75 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_79 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_81 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_82 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_83 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_84 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_85 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_86 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_87 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_88 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_89 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_90 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_91 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_92 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_93 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_94 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_96 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_97 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_98 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_99 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_100 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_102 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_104 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_105 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_106 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_107 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_108 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_109 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_110 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_111 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_113 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_115 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_117 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_118 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_119 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_120 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_121 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_122 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_125 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_126 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_129 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_130 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_131 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_133 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_134 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_135 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_136 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_143 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_145 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_146 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_148 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_150 | 1.0 | 0.0 | 1.0 |
| KHDPMCMB_155 | 0.0 | 1.0 | 0.0 |
| KHDPMCMB_156 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KHDPMCMB_82 | 100014 | 128864 | False | Siphoviridae | VOG1637, VOG8294, VOG9531, VOG4619, VOG0801, VOG4910, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4572, VOG4555, VOG0692, VOG0691, VOG4544, VOG0796, VOG0638, VOG0143, VOG0198, VOG3643, VOG0044, VOG4693, VOG4566 |
| KHDPMCMB_82 | 132424 | 145670 | False | Siphoviridae | VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581 |
Phigaro v2.4.0 (Database: Jan. 2024 release)