Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JGMOAPNL_62 | 44266 | 43562 | WalR | 1.11e-114 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| JGMOAPNL_22 | 57587 | 57393 | CspR | 2.85e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| JGMOAPNL_22 | 57587 | 57390 | CspA | 4.37e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JGMOAPNL_4 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_6 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_8 | 1.0 | 0.0 | 1.0 |
| JGMOAPNL_11 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_12 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_13 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_14 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_15 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_16 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_17 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_18 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_19 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_20 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_21 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_22 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_23 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_24 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_25 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_26 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_27 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_28 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_29 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_30 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_31 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_32 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_33 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_34 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_35 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_36 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_37 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_38 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_39 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_40 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_41 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_42 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_43 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_44 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_45 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_46 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_47 | 1.0 | 0.0 | 1.0 |
| JGMOAPNL_50 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_51 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_53 | 1.0 | 0.0 | 1.0 |
| JGMOAPNL_54 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_56 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_58 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_60 | 1.0 | 0.0 | 1.0 |
| JGMOAPNL_62 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_66 | 0.0 | 1.0 | 0.0 |
| JGMOAPNL_71 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JGMOAPNL_6 | 50849 | 87614 | False | Siphoviridae | VOG8222, VOG0181, VOG8925, VOG0321, VOG4548, VOG9667, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0044, VOG3580, VOG0052, VOG6972, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888, VOG0602, VOG8294, VOG1521, VOG1191, VOG3443 |
| JGMOAPNL_15 | 200017 | 228665 | False | Siphoviridae | VOG8870, VOG10957, VOG4599, VOG4605, VOG5904, VOG0660, VOG0209, VOG4586, VOG0207, VOG8239, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG7810, VOG0741, VOG4841, VOG0198, VOG6005, VOG0189, VOG4566, VOG4566, VOG5073 |
| JGMOAPNL_21 | 47780 | 77375 | False | Siphoviridae | VOG0535, VOG0322, VOG6545, VOG5046, VOG0189, VOG6005, VOG0198, VOG6495, VOG2124, VOG3699, VOG10227, VOG0720, VOG4564, VOG10914, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4599, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG4918, VOG0753 |
| JGMOAPNL_62 | 45186 | 56358 | False | Siphoviridae | VOG8908, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)