Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BHBNLAEF_36 | 155381 | 154677 | WalR | 2.38e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| BHBNLAEF_23 | 95071 | 94877 | CspR | 4.50e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| BHBNLAEF_23 | 95071 | 94874 | CspA | 6.91e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BHBNLAEF_1 | 1.0 | 0.0 | 1.0 |
| BHBNLAEF_2 | 1.0 | 0.0 | 1.0 |
| BHBNLAEF_3 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_5 | 1.0 | 0.0 | 1.0 |
| BHBNLAEF_6 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_9 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_13 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_17 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_19 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_21 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_22 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_23 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_24 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_25 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_26 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_27 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_28 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_29 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_30 | 1.0 | 0.0 | 1.0 |
| BHBNLAEF_31 | 1.0 | 0.0 | 1.0 |
| BHBNLAEF_32 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_33 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_34 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_35 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_36 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_37 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_38 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_39 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_40 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_41 | 1.0 | 0.0 | 1.0 |
| BHBNLAEF_42 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_43 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_44 | 1.0 | 0.0 | 1.0 |
| BHBNLAEF_45 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_46 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_47 | 1.0 | 0.0 | 1.0 |
| BHBNLAEF_48 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_49 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_50 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_51 | 1.0 | 0.0 | 1.0 |
| BHBNLAEF_52 | 1.0 | 0.0 | 1.0 |
| BHBNLAEF_53 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_54 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_55 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_56 | 1.0 | 0.0 | 1.0 |
| BHBNLAEF_57 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_59 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_60 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_61 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_62 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_63 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_64 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_65 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_67 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_68 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_69 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_71 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_72 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_73 | 1.0 | 0.0 | 1.0 |
| BHBNLAEF_74 | 1.0 | 0.0 | 1.0 |
| BHBNLAEF_75 | 1.0 | 0.0 | 1.0 |
| BHBNLAEF_76 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_80 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_81 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_83 | 1.0 | 0.0 | 1.0 |
| BHBNLAEF_86 | 1.0 | 0.0 | 1.0 |
| BHBNLAEF_87 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_88 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_91 | 0.0 | 1.0 | 0.0 |
| BHBNLAEF_96 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BHBNLAEF_21 | 25274 | 32749 | False | Siphoviridae | VOG10077, VOG3304, VOG4602, VOG9667, VOG4552, VOG0226, VOG4799 |
| BHBNLAEF_28 | 17962 | 36516 | False | Siphoviridae | VOG8917, VOG4856, VOG4619, VOG0801, VOG1323, VOG0725, VOG0799, VOG1321, VOG5660, VOG1320, VOG4713, VOG0694, VOG4555, VOG4564, VOG0720, VOG10227 |
| BHBNLAEF_46 | 22931 | 26010 | False | Siphoviridae | VOG11077, VOG2124, VOG4552, VOG10059, VOG0181 |
| BHBNLAEF_46 | 29053 | 54010 | False | Siphoviridae | VOG10015, VOG0044, VOG2602, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG5904, VOG4605, VOG4599 |
| BHBNLAEF_50 | 3483 | 25370 | False | Siphoviridae | VOG0720, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498 |
Phigaro v2.4.0 (Database: Jan. 2024 release)