Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ABHBFDOH_26 | 257188 | 257892 | WalR | 1.67e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| ABHBFDOH_37 | 7144 | 7338 | CspR | 6.67e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| ABHBFDOH_37 | 7144 | 7341 | CspA | 1.02e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ABHBFDOH_1 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_2 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_5 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_6 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_7 | 1.0 | 0.0 | 1.0 |
| ABHBFDOH_8 | 1.0 | 0.0 | 1.0 |
| ABHBFDOH_10 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_11 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_12 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_14 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_19 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_20 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_21 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_22 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_23 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_24 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_25 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_26 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_27 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_28 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_29 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_30 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_31 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_32 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_33 | 1.0 | 0.0 | 1.0 |
| ABHBFDOH_34 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_35 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_36 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_37 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_38 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_39 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_40 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_41 | 1.0 | 0.0 | 1.0 |
| ABHBFDOH_42 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_43 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_44 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_45 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_46 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_47 | 0.0 | 1.0 | 0.0 |
| ABHBFDOH_48 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ABHBFDOH_42 | 2999 | 41805 | False | Siphoviridae | VOG0054, VOG0753, VOG4918, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4599, VOG4633, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG3699, VOG2124, VOG6495, VOG0198, VOG6005, VOG0189, VOG5046, VOG6545, VOG0322, VOG0535, VOG1250, VOG3549, VOG9667, VOG6495, VOG4602, VOG9667, VOG4602, VOG7508, VOG9592 |
| ABHBFDOH_48 | 46634 | 59194 | False | Siphoviridae | VOG0348, VOG9326, VOG4602, VOG8520, VOG1563, VOG8222, VOG0181, VOG8925, VOG0321, VOG4548, VOG6394, VOG0322, VOG6545, VOG4632 |
| ABHBFDOH_48 | 64411 | 88395 | False | Siphoviridae | VOG6154, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888, VOG0602, VOG8294, VOG1191 |
Phigaro v2.4.0 (Database: Jan. 2024 release)