Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AFKPMJNN_27 | 68277 | 68981 | WalR | 8.25e-115 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| AFKPMJNN_53 | 86036 | 85842 | CspR | 4.11e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| AFKPMJNN_53 | 86036 | 85839 | CspA | 6.30e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AFKPMJNN_2 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_3 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_4 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_5 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_6 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_7 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_8 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_9 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_10 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_11 | 1.0 | 0.0 | 1.0 |
| AFKPMJNN_12 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_13 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_14 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_15 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_16 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_17 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_18 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_19 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_20 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_21 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_22 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_23 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_24 | 1.0 | 0.0 | 1.0 |
| AFKPMJNN_25 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_26 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_27 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_28 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_29 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_30 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_32 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_33 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_34 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_35 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_36 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_37 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_38 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_40 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_41 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_44 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_47 | 1.0 | 0.0 | 1.0 |
| AFKPMJNN_48 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_49 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_50 | 1.0 | 0.0 | 1.0 |
| AFKPMJNN_52 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_53 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_54 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_56 | 0.0 | 1.0 | 0.0 |
| AFKPMJNN_59 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AFKPMJNN_4 | 62348 | 66418 | False | Siphoviridae | VOG4602, VOG6495, VOG9667, VOG1250, VOG0535 |
| AFKPMJNN_33 | 42788 | 64286 | False | Siphoviridae | VOG0866, VOG0054, VOG0753, VOG4918, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4599, VOG4633, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227 |
Phigaro v2.4.0 (Database: Jan. 2024 release)