Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LNBPODHI_62 | 9626 | 8922 | WalR | 2.79e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| LNBPODHI_60 | 20564 | 20761 | CspR | 2.14e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LNBPODHI_8 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_14 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_17 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_19 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_22 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_24 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_29 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_30 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_36 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_37 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_38 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_39 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_40 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_41 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_42 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_43 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_44 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_45 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_46 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_47 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_48 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_49 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_50 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_51 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_52 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_53 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_54 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_55 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_56 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_57 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_58 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_59 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_60 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_61 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_62 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_63 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_64 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_65 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_67 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_68 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_69 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_71 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_72 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_73 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_74 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_75 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_76 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_77 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_78 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_79 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_80 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_81 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_82 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_83 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_84 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_85 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_87 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_88 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_89 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_90 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_91 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_93 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_94 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_95 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_96 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_97 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_98 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_99 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_100 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_103 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_105 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_108 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_109 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_110 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_111 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_112 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_113 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_114 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_117 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_118 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_119 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_120 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_124 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_126 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_127 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_128 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_129 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_130 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_131 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_132 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_133 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_134 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_135 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_136 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_138 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_139 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_141 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_144 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_146 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_148 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_151 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_152 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_155 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_156 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_157 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_160 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_162 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_165 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_167 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_170 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_175 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_182 | 0.0 | 1.0 | 0.0 |
| LNBPODHI_185 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_190 | 1.0 | 0.0 | 1.0 |
| LNBPODHI_196 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LNBPODHI_129 | 109213 | 131231 | False | Siphoviridae | VOG4649, VOG0703, VOG0054, VOG1637, VOG0648, VOG3498, VOG4763, VOG4633, VOG4545, VOG1898, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG0519, VOG4841, VOG5699, VOG6242, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)