Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JPPBGDGC_3 | 29745 | 29041 | WalR | 8.90e-114 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| JPPBGDGC_7 | 23526 | 23723 | CspR | 1.78e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JPPBGDGC_1 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_2 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_3 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_4 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_5 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_6 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_7 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_8 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_9 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_10 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_11 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_12 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_13 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_14 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_15 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_16 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_17 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_18 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_19 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_20 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_21 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_24 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_25 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_28 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_31 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_35 | 1.0 | 0.0 | 1.0 |
| JPPBGDGC_36 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_37 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_39 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_41 | 0.0 | 1.0 | 0.0 |
| JPPBGDGC_42 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JPPBGDGC_5 | 179886 | 190474 | False | Siphoviridae | VOG1581, VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204 |
| JPPBGDGC_7 | 43963 | 80347 | False | Siphoviridae | VOG0283, VOG0226, VOG0189, VOG9910, VOG11003, VOG9860, VOG6623, VOG4693, VOG0195, VOG0275, VOG4643, VOG0152, VOG3643, VOG5878, VOG0044, VOG9761, VOG0198, VOG0198, VOG3477, VOG4570, VOG0796, VOG4544, VOG0720, VOG4564, VOG5616, VOG1183, VOG4555, VOG3434, VOG1887, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG6455, VOG7896, VOG7888, VOG0703 |
Phigaro v2.4.0 (Database: Jan. 2024 release)