Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
IPDKCDBJ_806332562621WalR1.63e-112transcriptional regulatory protein83.40100.00EPH95667
IPDKCDBJ_162922029023CspR6.56e-34cold shock protein89.39100.00AAO82613

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
IPDKCDBJ_90.01.00.0
IPDKCDBJ_100.01.00.0
IPDKCDBJ_160.01.00.0
IPDKCDBJ_211.00.01.0
IPDKCDBJ_241.00.01.0
IPDKCDBJ_281.00.01.0
IPDKCDBJ_300.01.00.0
IPDKCDBJ_310.01.00.0
IPDKCDBJ_320.01.00.0
IPDKCDBJ_340.01.00.0
IPDKCDBJ_350.01.00.0
IPDKCDBJ_360.01.00.0
IPDKCDBJ_370.01.00.0
IPDKCDBJ_380.01.00.0
IPDKCDBJ_391.00.01.0
IPDKCDBJ_400.01.00.0
IPDKCDBJ_410.01.00.0
IPDKCDBJ_421.00.01.0
IPDKCDBJ_430.01.00.0
IPDKCDBJ_440.01.00.0
IPDKCDBJ_451.00.01.0
IPDKCDBJ_461.00.01.0
IPDKCDBJ_471.00.01.0
IPDKCDBJ_480.01.00.0
IPDKCDBJ_490.01.00.0
IPDKCDBJ_501.00.01.0
IPDKCDBJ_510.01.00.0
IPDKCDBJ_520.01.00.0
IPDKCDBJ_531.00.01.0
IPDKCDBJ_541.00.01.0
IPDKCDBJ_551.00.01.0
IPDKCDBJ_560.01.00.0
IPDKCDBJ_571.00.01.0
IPDKCDBJ_580.01.00.0
IPDKCDBJ_591.00.01.0
IPDKCDBJ_601.00.01.0
IPDKCDBJ_611.00.01.0
IPDKCDBJ_621.00.01.0
IPDKCDBJ_631.00.01.0
IPDKCDBJ_651.00.01.0
IPDKCDBJ_660.01.00.0
IPDKCDBJ_681.00.01.0
IPDKCDBJ_711.00.01.0
IPDKCDBJ_731.00.01.0
IPDKCDBJ_750.01.00.0
IPDKCDBJ_781.00.01.0
IPDKCDBJ_790.01.00.0
IPDKCDBJ_800.01.00.0
IPDKCDBJ_811.00.01.0
IPDKCDBJ_881.00.01.0
IPDKCDBJ_910.01.00.0
IPDKCDBJ_920.01.00.0
IPDKCDBJ_940.01.00.0
IPDKCDBJ_951.00.01.0
IPDKCDBJ_1001.00.01.0
IPDKCDBJ_1031.00.01.0
IPDKCDBJ_1101.00.01.0
IPDKCDBJ_1210.01.00.0
IPDKCDBJ_1231.00.01.0
IPDKCDBJ_1240.01.00.0
IPDKCDBJ_1250.01.00.0
IPDKCDBJ_1261.00.01.0
IPDKCDBJ_1270.01.00.0
IPDKCDBJ_1280.01.00.0
IPDKCDBJ_1290.01.00.0
IPDKCDBJ_1300.01.00.0
IPDKCDBJ_1310.01.00.0
IPDKCDBJ_1320.01.00.0
IPDKCDBJ_1340.01.00.0
IPDKCDBJ_1350.01.00.0
IPDKCDBJ_1360.01.00.0
IPDKCDBJ_1370.01.00.0
IPDKCDBJ_1380.01.00.0
IPDKCDBJ_1390.01.00.0
IPDKCDBJ_1400.01.00.0
IPDKCDBJ_1410.01.00.0
IPDKCDBJ_1420.01.00.0
IPDKCDBJ_1440.01.00.0
IPDKCDBJ_1450.01.00.0
IPDKCDBJ_1500.01.00.0
IPDKCDBJ_1510.01.00.0
IPDKCDBJ_1520.01.00.0
IPDKCDBJ_1530.01.00.0
IPDKCDBJ_1550.01.00.0
IPDKCDBJ_1561.00.01.0
IPDKCDBJ_1610.01.00.0
IPDKCDBJ_1630.01.00.0
IPDKCDBJ_1651.00.01.0
IPDKCDBJ_1691.00.01.0
IPDKCDBJ_1710.01.00.0
IPDKCDBJ_1821.00.01.0
IPDKCDBJ_1840.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
IPDKCDBJ_1610108739FalseSiphoviridaeVOG4693, VOG6623, VOG9860, VOG11003, VOG8987, VOG1638, VOG6238, VOG4566, VOG0186, VOG1309, VOG8241, VOG1305, VOG6495
IPDKCDBJ_4485510583FalseSiphoviridaeVOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG4967, VOG6450, VOG10867, VOG0181, VOG10059, VOG8520, VOG0862
IPDKCDBJ_4813778168FalseSiphoviridaeVOG4566, VOG11003, VOG1309, VOG4600, VOG10867, VOG0181, VOG4552, VOG5353, VOG6495, VOG4602
IPDKCDBJ_52155122968FalseSiphoviridaeVOG4570, VOG4549, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG1322, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4605, VOG4599, VOG6455, VOG7896
IPDKCDBJ_80129260140009FalseSiphoviridaeVOG1581, VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements