Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MCLNMAKN_92 | 16557 | 17261 | WalR | 3.54e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| MCLNMAKN_57 | 9075 | 9272 | CspR | 8.46e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MCLNMAKN_50 | 29849 | 30909 | repUS73 | 1061 / 1101 | 97.36 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MCLNMAKN_1 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_2 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_3 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_4 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_6 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_9 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_10 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_11 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_12 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_13 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_15 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_18 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_19 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_20 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_24 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_25 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_27 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_28 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_31 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_34 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_35 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_40 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_41 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_43 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_44 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_46 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_49 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_50 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_51 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_53 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_54 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_55 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_57 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_60 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_62 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_65 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_66 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_67 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_69 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_71 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_75 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_76 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_80 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_82 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_85 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_87 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_88 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_92 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_95 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_99 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_100 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_107 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_110 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_111 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_119 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_123 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_124 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_125 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_132 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_134 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_137 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_144 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_146 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_148 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_149 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_152 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_156 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_160 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_163 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_164 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_171 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_172 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_174 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_177 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_180 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_183 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_186 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_189 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_190 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_194 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_195 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_196 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_197 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_199 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_200 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_201 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_202 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_203 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_204 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_205 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_206 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_207 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_208 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_209 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_210 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_211 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_213 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_214 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_215 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_218 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_219 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_220 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_221 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_223 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_225 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_226 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_227 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_228 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_230 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_231 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_232 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_234 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_235 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_236 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_237 | 1.0 | 0.0 | 1.0 |
| MCLNMAKN_238 | 0.0 | 1.0 | 0.0 |
| MCLNMAKN_240 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MCLNMAKN_124 | 597 | 8538 | False | Siphoviridae | VOG4599, VOG6455, VOG7896, VOG0753, VOG0703, VOG8294, VOG6495 |
| MCLNMAKN_205 | 13082 | 25780 | False | Siphoviridae | VOG10904, VOG1345, VOG6428, VOG0226, VOG4841, VOG0195, VOG4581, VOG1886, VOG0202, VOG4556, VOG4568, VOG0205, VOG0207, VOG4586 |
Phigaro v2.4.0 (Database: Jan. 2024 release)