Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CGEPDACM_15 | 67330 | 68034 | WalR | 1.25e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| CGEPDACM_55 | 71034 | 70837 | CspR | 3.93e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CGEPDACM_3 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_8 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_10 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_11 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_15 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_19 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_25 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_26 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_29 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_31 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_32 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_34 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_35 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_38 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_39 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_40 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_42 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_44 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_45 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_46 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_47 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_49 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_50 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_51 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_52 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_53 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_54 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_55 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_56 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_57 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_58 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_59 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_60 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_61 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_62 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_63 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_64 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_65 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_66 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_68 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_69 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_71 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_72 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_73 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_74 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_75 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_76 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_77 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_78 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_79 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_80 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_81 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_82 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_83 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_84 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_85 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_86 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_87 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_88 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_90 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_91 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_93 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_94 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_95 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_96 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_98 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_101 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_102 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_103 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_104 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_105 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_106 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_107 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_111 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_113 | 1.0 | 0.0 | 1.0 |
| CGEPDACM_117 | 0.0 | 1.0 | 0.0 |
| CGEPDACM_119 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CGEPDACM_8 | 215440 | 223997 | False | Siphoviridae | VOG6914, VOG0862, VOG8520, VOG5353, VOG4552, VOG10059, VOG6428, VOG0181, VOG10867, VOG3642, VOG4799, VOG0025, VOG7735, VOG4813 |
| CGEPDACM_19 | 2714 | 21416 | False | Siphoviridae | VOG1315, VOG4570, VOG5821, VOG4549, VOG1345, VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG4553, VOG10303, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225 |
| CGEPDACM_77 | 6327 | 8786 | False | Siphoviridae | VOG2338, VOG4322, VOG0806 |
| CGEPDACM_93 | 2174 | 9462 | False | Siphoviridae | VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606 |
Phigaro v2.4.0 (Database: Jan. 2024 release)