Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BENHCDKE_160 | 177 | 881 | WalR | 6.84e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| BENHCDKE_145 | 60665 | 60468 | CspR | 3.17e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BENHCDKE_192 | 4056 | 5114 | repUS75 | 1059 / 1059 | 99.72 | CP002393 |
| BENHCDKE_119 | 881 | 1805 | repUS64 | 930 / 954 | 85.48 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BENHCDKE_1 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_2 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_3 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_4 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_5 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_6 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_7 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_8 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_9 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_10 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_11 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_12 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_14 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_15 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_16 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_17 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_18 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_19 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_20 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_21 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_22 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_23 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_24 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_26 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_28 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_29 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_30 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_34 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_35 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_36 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_37 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_38 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_40 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_41 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_42 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_43 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_44 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_45 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_46 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_48 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_49 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_51 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_52 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_55 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_56 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_59 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_62 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_65 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_66 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_68 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_71 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_73 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_75 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_76 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_79 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_81 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_83 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_85 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_86 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_88 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_89 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_94 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_96 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_99 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_101 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_104 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_106 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_107 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_109 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_110 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_111 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_115 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_117 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_118 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_119 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_122 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_128 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_131 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_136 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_138 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_142 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_143 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_144 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_145 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_146 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_148 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_149 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_150 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_152 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_153 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_154 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_155 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_156 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_157 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_158 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_159 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_160 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_161 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_162 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_163 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_164 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_165 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_166 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_167 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_168 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_169 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_170 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_171 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_172 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_173 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_174 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_175 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_176 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_177 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_178 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_179 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_181 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_183 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_184 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_185 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_186 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_187 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_189 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_190 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_191 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_192 | 1.0 | 0.0 | 1.0 |
| BENHCDKE_193 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_195 | 0.0 | 1.0 | 0.0 |
| BENHCDKE_196 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BENHCDKE_128 | 1364 | 23711 | False | Siphoviridae | VOG10904, VOG4549, VOG1345, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637, VOG0703, VOG4918 |
Phigaro v2.4.0 (Database: Jan. 2024 release)