Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LMIIGHLH_71 | 57504 | 58208 | WalR | 5.93e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| LMIIGHLH_56 | 16098 | 15901 | CspR | 2.84e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LMIIGHLH_1 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_2 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_3 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_4 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_5 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_6 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_7 | 1.0 | 0.0 | 1.0 |
| LMIIGHLH_8 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_9 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_10 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_11 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_12 | 1.0 | 0.0 | 1.0 |
| LMIIGHLH_13 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_14 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_15 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_16 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_17 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_18 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_19 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_20 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_21 | 1.0 | 0.0 | 1.0 |
| LMIIGHLH_22 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_23 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_24 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_25 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_26 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_27 | 1.0 | 0.0 | 1.0 |
| LMIIGHLH_28 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_29 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_30 | 1.0 | 0.0 | 1.0 |
| LMIIGHLH_31 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_33 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_34 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_35 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_36 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_37 | 1.0 | 0.0 | 1.0 |
| LMIIGHLH_39 | 1.0 | 0.0 | 1.0 |
| LMIIGHLH_40 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_41 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_42 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_44 | 1.0 | 0.0 | 1.0 |
| LMIIGHLH_45 | 1.0 | 0.0 | 1.0 |
| LMIIGHLH_47 | 1.0 | 0.0 | 1.0 |
| LMIIGHLH_48 | 1.0 | 0.0 | 1.0 |
| LMIIGHLH_50 | 1.0 | 0.0 | 1.0 |
| LMIIGHLH_55 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_56 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_57 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_58 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_59 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_60 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_61 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_62 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_63 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_64 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_65 | 1.0 | 0.0 | 1.0 |
| LMIIGHLH_67 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_68 | 1.0 | 0.0 | 1.0 |
| LMIIGHLH_69 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_70 | 1.0 | 0.0 | 1.0 |
| LMIIGHLH_71 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_72 | 1.0 | 0.0 | 1.0 |
| LMIIGHLH_73 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_74 | 1.0 | 0.0 | 1.0 |
| LMIIGHLH_75 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_77 | 1.0 | 0.0 | 1.0 |
| LMIIGHLH_78 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_79 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_80 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_82 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_83 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_84 | 1.0 | 0.0 | 1.0 |
| LMIIGHLH_88 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_89 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_91 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_93 | 1.0 | 0.0 | 1.0 |
| LMIIGHLH_95 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_97 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_98 | 1.0 | 0.0 | 1.0 |
| LMIIGHLH_99 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_102 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_104 | 1.0 | 0.0 | 1.0 |
| LMIIGHLH_109 | 1.0 | 0.0 | 1.0 |
| LMIIGHLH_113 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_117 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_121 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_123 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_127 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_128 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_129 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_130 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_131 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_132 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_133 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_134 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_135 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_136 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_137 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_138 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_139 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_140 | 0.0 | 1.0 | 0.0 |
| LMIIGHLH_141 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LMIIGHLH_2 | 6175 | 14870 | False | Siphoviridae | VOG0207, VOG0205, VOG4568, VOG4556, VOG0202, VOG1886, VOG4581, VOG0195 |
Phigaro v2.4.0 (Database: Jan. 2024 release)