Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LFFODGAM_1 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_2 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_3 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_4 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_6 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_7 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_8 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_9 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_10 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_11 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_12 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_13 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_14 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_15 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_16 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_17 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_18 | 1.0 | 0.0 | 1.0 |
| LFFODGAM_22 | 1.0 | 0.0 | 1.0 |
| LFFODGAM_23 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_24 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_25 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_26 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_27 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_28 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_29 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_30 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_31 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_32 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_33 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_34 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_37 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_38 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_42 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_43 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_47 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_49 | 1.0 | 0.0 | 1.0 |
| LFFODGAM_50 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_58 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_59 | 0.0 | 1.0 | 0.0 |
| LFFODGAM_60 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LFFODGAM_59 | 188462 | 209934 | False | Siphoviridae | VOG0634, VOG3531, VOG0198, VOG4841, VOG4581, VOG0686, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG5806, VOG10939, VOG0207, VOG4586, VOG4545, VOG4633 |
Phigaro v2.4.0 (Database: Jan. 2024 release)