Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LMDJGCCJ_1 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_2 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_3 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_4 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_5 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_7 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_8 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_9 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_11 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_12 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_13 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_14 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_17 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_19 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_21 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_22 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_23 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_24 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_25 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_26 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_27 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_28 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_29 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_30 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_32 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_33 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_35 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_36 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_38 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_40 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_41 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_42 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_44 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_46 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_47 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_48 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_49 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_50 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_51 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_52 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_58 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_60 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_63 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_65 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_66 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_67 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_69 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_70 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_71 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_73 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_74 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_75 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_80 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_83 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_85 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_95 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_102 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_103 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_106 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_120 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_128 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_129 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_130 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_133 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_134 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_135 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_136 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_137 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_138 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_140 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_141 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_142 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_143 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_144 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_145 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_146 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_147 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_148 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_149 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_150 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_151 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_152 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_154 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_155 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_156 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_157 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_160 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_161 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_162 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_165 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_167 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_168 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_169 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_170 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_171 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_172 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_173 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_174 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_175 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_176 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_177 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_178 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_179 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_180 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_183 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_184 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_185 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_187 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_191 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_192 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_193 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_194 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_195 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_202 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_203 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_210 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_216 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_219 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_220 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_221 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_222 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_223 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_224 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_226 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_227 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_228 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_229 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_230 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_231 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_232 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_233 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_234 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_235 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_237 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_238 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_239 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_240 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_241 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_242 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_243 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_244 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_245 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_246 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_247 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_248 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_249 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_250 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_251 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_252 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_254 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_255 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_256 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_257 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_258 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_259 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_260 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_261 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_262 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_263 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_264 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_265 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_266 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_267 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_268 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_270 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_271 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_272 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_273 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_274 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_275 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_276 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_277 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_278 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_279 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_280 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_281 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_283 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_284 | 1.0 | 0.0 | 1.0 |
| LMDJGCCJ_285 | 0.0 | 1.0 | 0.0 |
| LMDJGCCJ_286 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LMDJGCCJ_202 | 6644 | 39079 | False | Myoviridae | VOG4548, VOG6414, VOG0322, VOG6545, VOG4632, VOG4609, VOG11033, VOG4966, VOG4677, VOG6414, VOG0327, VOG6005, VOG0198, VOG0796, VOG1886, VOG0720, VOG4564, VOG4555, VOG4572, VOG4623, VOG3888, VOG1900, VOG4870, VOG5612, VOG3890, VOG3891, VOG3892, VOG5793, VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG0526, VOG9945, VOG4705, VOG0861 |
Phigaro v2.4.0 (Database: Jan. 2024 release)