Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OMBOFECA_109 | 23196 | 23393 | CspA | 2.09e-29 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| OMBOFECA_109 | 23196 | 23390 | CspR | 1.77e-27 | cold shock protein | 83.08 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OMBOFECA_1 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_2 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_3 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_4 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_5 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_6 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_7 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_8 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_9 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_11 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_12 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_13 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_16 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_17 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_19 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_20 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_21 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_22 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_24 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_25 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_26 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_27 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_28 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_35 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_36 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_37 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_41 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_43 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_44 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_45 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_47 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_50 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_53 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_62 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_65 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_66 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_67 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_77 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_83 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_84 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_85 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_86 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_87 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_88 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_90 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_91 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_92 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_93 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_94 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_95 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_96 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_97 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_98 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_101 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_102 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_103 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_104 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_105 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_107 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_108 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_109 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_110 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_113 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_114 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_115 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_116 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_117 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_118 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_119 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_120 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_121 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_122 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_123 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_124 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_126 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_130 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_136 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_145 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_147 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_148 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_149 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_150 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_151 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_152 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_154 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_155 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_156 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_157 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_159 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_160 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_161 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_162 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_163 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_164 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_165 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_166 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_167 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_169 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_171 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_172 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_173 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_174 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_175 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_176 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_177 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_179 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_181 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_182 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_183 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_184 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_186 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_187 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_188 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_189 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_190 | 1.0 | 0.0 | 1.0 |
| OMBOFECA_191 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_192 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_194 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_195 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_196 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_197 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_201 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_202 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_203 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_204 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_205 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_206 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_207 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_209 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_211 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_212 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_215 | 0.0 | 1.0 | 0.0 |
| OMBOFECA_216 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OMBOFECA_96 | 4040 | 12079 | False | Siphoviridae | VOG0275, VOG4677, VOG1159, VOG4585, VOG0275 |
| OMBOFECA_147 | 27470 | 33651 | False | Myoviridae | VOG6024, VOG0535, VOG0322, VOG6545, VOG0189, VOG8685, VOG4693, VOG3307, VOG4122, VOG4010 |
| OMBOFECA_147 | 35192 | 62774 | False | Siphoviridae | VOG4361, VOG4559, VOG0044, VOG8625, VOG0198, VOG1446, VOG0198, VOG3349, VOG10266, VOG5453, VOG1854, VOG3349, VOG4841, VOG4581, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG6698, VOG8263, VOG0801 |
| OMBOFECA_189 | 30 | 20632 | False | Siphoviridae | VOG10972, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841 |
Phigaro v2.4.0 (Database: Jan. 2024 release)