Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GFLLCGNI_48 | 21657 | 21854 | CspA | 1.59e-29 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| GFLLCGNI_48 | 21657 | 21851 | CspR | 1.35e-27 | cold shock protein | 83.08 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GFLLCGNI_174 | 27082 | 28118 | rep38 | 1043 / 1104 | 84.47 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GFLLCGNI_2 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_3 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_4 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_5 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_6 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_7 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_8 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_9 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_10 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_11 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_12 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_13 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_15 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_16 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_18 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_19 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_20 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_21 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_24 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_26 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_27 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_30 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_31 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_33 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_34 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_36 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_37 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_38 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_39 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_40 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_41 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_42 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_44 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_45 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_46 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_47 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_48 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_50 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_56 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_58 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_59 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_60 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_61 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_63 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_66 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_67 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_68 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_69 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_70 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_71 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_73 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_74 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_76 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_78 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_82 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_83 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_86 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_87 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_89 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_91 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_93 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_94 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_96 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_97 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_100 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_105 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_112 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_115 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_130 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_132 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_139 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_141 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_146 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_158 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_162 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_163 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_164 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_165 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_166 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_168 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_169 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_172 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_174 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_175 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_176 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_177 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_178 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_179 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_180 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_181 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_182 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_183 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_184 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_185 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_186 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_187 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_188 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_189 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_190 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_191 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_192 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_193 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_194 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_195 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_196 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_197 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_198 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_199 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_200 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_201 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_202 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_203 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_206 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_207 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_209 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_211 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_213 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_214 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_215 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_216 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_217 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_218 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_219 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_220 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_221 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_222 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_223 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_224 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_226 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_227 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_228 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_229 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_230 | 0.0 | 1.0 | 0.0 |
| GFLLCGNI_231 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_232 | 1.0 | 0.0 | 1.0 |
| GFLLCGNI_233 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GFLLCGNI_5 | 5929 | 13304 | False | Myoviridae | VOG0226, VOG0205, VOG0384, VOG0382, VOG0083 |
Phigaro v2.4.0 (Database: Jan. 2024 release)