Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LPACNFEN_30 | 37421 | 37618 | CspA | 1.88e-28 | cold shock protein | 80.30 | 100.00 | CAA62903 |
| LPACNFEN_30 | 37421 | 37615 | CspR | 8.16e-28 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LPACNFEN_2 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_4 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_5 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_7 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_8 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_9 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_11 | 1.0 | 0.0 | 1.0 |
| LPACNFEN_13 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_15 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_16 | 1.0 | 0.0 | 1.0 |
| LPACNFEN_17 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_18 | 1.0 | 0.0 | 1.0 |
| LPACNFEN_19 | 1.0 | 0.0 | 1.0 |
| LPACNFEN_20 | 1.0 | 0.0 | 1.0 |
| LPACNFEN_21 | 1.0 | 0.0 | 1.0 |
| LPACNFEN_22 | 1.0 | 0.0 | 1.0 |
| LPACNFEN_26 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_27 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_28 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_29 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_30 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_31 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_32 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_33 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_34 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_35 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_39 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_41 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_44 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_45 | 1.0 | 0.0 | 1.0 |
| LPACNFEN_47 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_51 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_52 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_54 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_55 | 1.0 | 0.0 | 1.0 |
| LPACNFEN_56 | 1.0 | 0.0 | 1.0 |
| LPACNFEN_57 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_58 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_59 | 1.0 | 0.0 | 1.0 |
| LPACNFEN_61 | 1.0 | 0.0 | 1.0 |
| LPACNFEN_62 | 1.0 | 0.0 | 1.0 |
| LPACNFEN_63 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_65 | 1.0 | 0.0 | 1.0 |
| LPACNFEN_67 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_70 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_74 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_78 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_81 | 1.0 | 0.0 | 1.0 |
| LPACNFEN_83 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_84 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_89 | 1.0 | 0.0 | 1.0 |
| LPACNFEN_90 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_97 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_100 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_103 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_105 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_106 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_107 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_109 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_110 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_113 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_114 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_115 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_117 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_119 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_121 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_122 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_123 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_124 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_125 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_128 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_129 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_130 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_132 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_133 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_134 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_135 | 1.0 | 0.0 | 1.0 |
| LPACNFEN_136 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_137 | 1.0 | 0.0 | 1.0 |
| LPACNFEN_138 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_139 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_141 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_142 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_143 | 1.0 | 0.0 | 1.0 |
| LPACNFEN_144 | 1.0 | 0.0 | 1.0 |
| LPACNFEN_145 | 1.0 | 0.0 | 1.0 |
| LPACNFEN_146 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_147 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_148 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_150 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_151 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_152 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_153 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_154 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_156 | 1.0 | 0.0 | 1.0 |
| LPACNFEN_157 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_158 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_159 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_161 | 1.0 | 0.0 | 1.0 |
| LPACNFEN_162 | 0.0 | 1.0 | 0.0 |
| LPACNFEN_163 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LPACNFEN_8 | 19705 | 58486 | False | Siphoviridae | VOG0221, VOG9859, VOG0248, VOG6823, VOG4552, VOG0535, VOG0322, VOG0226, VOG4566, VOG0189, VOG8685, VOG4693, VOG9671, VOG3307, VOG0198, VOG4841, VOG10904, VOG4581, VOG5068, VOG1886, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG0209, VOG4545, VOG0801, VOG4760, VOG10972, VOG3405, VOG9997, VOG4856, VOG10223, VOG8917, VOG9226, VOG0703 |
| LPACNFEN_81 | 6441 | 31211 | False | Siphoviridae | VOG0819, VOG0862, VOG9667, VOG3622, VOG0650, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG10914, VOG1319, VOG4713, VOG5660, VOG0724, VOG0799, VOG0725, VOG4545 |
Phigaro v2.4.0 (Database: Jan. 2024 release)