Probiotic potential risk score


ARGs VFs PGs PPRS
0011.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
CCPPCCOK_1709601157CspA2.07e-29cold shock protein80.30100.00CAA62903
CCPPCCOK_1709601157CspR2.17e-29cold shock protein81.82100.00AAO82613

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
CCPPCCOK_31.00.01.0
CCPPCCOK_90.01.00.0
CCPPCCOK_101.00.01.0
CCPPCCOK_141.00.01.0
CCPPCCOK_180.01.00.0
CCPPCCOK_190.01.00.0
CCPPCCOK_200.01.00.0
CCPPCCOK_210.01.00.0
CCPPCCOK_220.01.00.0
CCPPCCOK_230.01.00.0
CCPPCCOK_240.01.00.0
CCPPCCOK_250.01.00.0
CCPPCCOK_260.01.00.0
CCPPCCOK_270.01.00.0
CCPPCCOK_280.01.00.0
CCPPCCOK_290.01.00.0
CCPPCCOK_300.01.00.0
CCPPCCOK_310.01.00.0
CCPPCCOK_320.01.00.0
CCPPCCOK_330.01.00.0
CCPPCCOK_340.01.00.0
CCPPCCOK_350.01.00.0
CCPPCCOK_360.01.00.0
CCPPCCOK_370.01.00.0
CCPPCCOK_380.01.00.0
CCPPCCOK_390.01.00.0
CCPPCCOK_400.01.00.0
CCPPCCOK_410.01.00.0
CCPPCCOK_420.01.00.0
CCPPCCOK_430.01.00.0
CCPPCCOK_440.01.00.0
CCPPCCOK_450.01.00.0
CCPPCCOK_460.01.00.0
CCPPCCOK_471.00.01.0
CCPPCCOK_480.01.00.0
CCPPCCOK_501.00.01.0
CCPPCCOK_521.00.01.0
CCPPCCOK_530.01.00.0
CCPPCCOK_560.01.00.0
CCPPCCOK_570.01.00.0
CCPPCCOK_581.00.01.0
CCPPCCOK_601.00.01.0
CCPPCCOK_611.00.01.0
CCPPCCOK_621.00.01.0
CCPPCCOK_631.00.01.0
CCPPCCOK_640.01.00.0
CCPPCCOK_660.01.00.0
CCPPCCOK_671.00.01.0
CCPPCCOK_681.00.01.0
CCPPCCOK_691.00.01.0
CCPPCCOK_701.00.01.0
CCPPCCOK_711.00.01.0
CCPPCCOK_761.00.01.0
CCPPCCOK_770.01.00.0
CCPPCCOK_870.01.00.0
CCPPCCOK_940.01.00.0
CCPPCCOK_950.01.00.0
CCPPCCOK_990.01.00.0
CCPPCCOK_1010.01.00.0
CCPPCCOK_1020.01.00.0
CCPPCCOK_1030.01.00.0
CCPPCCOK_1040.01.00.0
CCPPCCOK_1050.01.00.0
CCPPCCOK_1060.01.00.0
CCPPCCOK_1080.01.00.0
CCPPCCOK_1090.01.00.0
CCPPCCOK_1100.01.00.0
CCPPCCOK_1111.00.01.0
CCPPCCOK_1120.01.00.0
CCPPCCOK_1130.01.00.0
CCPPCCOK_1141.00.01.0
CCPPCCOK_1151.00.01.0
CCPPCCOK_1160.01.00.0
CCPPCCOK_1180.01.00.0
CCPPCCOK_1190.01.00.0
CCPPCCOK_1240.01.00.0
CCPPCCOK_1260.01.00.0
CCPPCCOK_1290.01.00.0
CCPPCCOK_1300.01.00.0
CCPPCCOK_1310.01.00.0
CCPPCCOK_1321.00.01.0
CCPPCCOK_1331.00.01.0
CCPPCCOK_1350.01.00.0
CCPPCCOK_1370.01.00.0
CCPPCCOK_1381.00.01.0
CCPPCCOK_1390.01.00.0
CCPPCCOK_1400.01.00.0
CCPPCCOK_1410.01.00.0
CCPPCCOK_1470.01.00.0
CCPPCCOK_1491.00.01.0
CCPPCCOK_1500.01.00.0
CCPPCCOK_1531.00.01.0
CCPPCCOK_1540.01.00.0
CCPPCCOK_1580.01.00.0
CCPPCCOK_1600.01.00.0
CCPPCCOK_1620.01.00.0
CCPPCCOK_1700.01.00.0
CCPPCCOK_1790.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
CCPPCCOK_21497311230FalseMyoviridae / SiphoviridaeVOG2215, VOG0862, VOG9267, VOG7340, VOG3685, VOG7424, VOG0275
CCPPCCOK_29357618560FalseSiphoviridaeVOG0327, VOG4548, VOG0198, VOG5088, VOG4581, VOG4571, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641
CCPPCCOK_401841826457FalseSiphoviridaeVOG0275, VOG4585, VOG1159, VOG4677
CCPPCCOK_1316436585613FalseMyoviridae / SiphoviridaeVOG10457, VOG1176, VOG8295, VOG0025, VOG6085, VOG0226, VOG0205, VOG0384, VOG0382, VOG0083, VOG5235

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements