Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PKDLDKHO_226 | 105757 | 105560 | CspA | 2.79e-29 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| PKDLDKHO_226 | 105757 | 105563 | CspR | 2.38e-27 | cold shock protein | 83.08 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PKDLDKHO_2 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_3 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_4 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_5 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_6 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_7 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_9 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_10 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_11 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_12 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_13 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_14 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_15 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_16 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_17 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_18 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_19 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_20 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_21 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_22 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_23 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_24 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_25 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_26 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_27 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_28 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_29 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_30 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_31 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_32 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_34 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_35 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_36 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_37 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_38 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_39 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_40 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_43 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_46 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_47 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_48 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_49 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_50 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_55 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_58 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_59 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_60 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_61 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_62 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_65 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_66 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_67 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_68 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_69 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_70 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_74 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_76 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_77 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_80 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_81 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_82 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_85 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_87 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_88 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_91 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_92 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_93 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_95 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_98 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_99 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_100 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_102 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_105 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_106 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_108 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_109 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_112 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_113 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_115 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_118 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_123 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_124 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_125 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_128 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_130 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_135 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_138 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_140 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_141 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_145 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_147 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_151 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_153 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_154 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_155 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_156 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_159 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_162 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_163 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_164 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_166 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_167 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_168 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_172 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_174 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_175 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_177 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_180 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_184 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_187 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_188 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_195 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_197 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_200 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_202 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_207 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_211 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_214 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_216 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_217 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_219 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_220 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_222 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_223 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_224 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_225 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_226 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_228 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_229 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_230 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_231 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_232 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_233 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_234 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_235 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_236 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_237 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_238 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_239 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_240 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_241 | 1.0 | 0.0 | 1.0 |
| PKDLDKHO_243 | 0.0 | 1.0 | 0.0 |
| PKDLDKHO_244 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PKDLDKHO_23 | 8224 | 10387 | False | Siphoviridae | VOG0862, VOG3622, VOG0181 |
| PKDLDKHO_226 | 9748 | 42520 | True | Siphoviridae | VOG4571, VOG11003, VOG0052, VOG7438, VOG1047, VOG0021, VOG0026, VOG4552, VOG4606, VOG0327, VOG4548, VOG0198, VOG8909, VOG4581, VOG4571, VOG7439, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG4589, VOG0641, VOG9502, VOG2576, VOG0221, VOG0221, VOG0221, VOG4567 |
Phigaro v2.4.0 (Database: Jan. 2024 release)