Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PCGHONEA_17 | 47638 | 49557 | tet(W) | ARO:3000194 | tet(W) | 97.03 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PCGHONEA_17 | 47638 | 49557 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.06 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PCGHONEA_17 | 47641 | 49557 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PCGHONEA_1 | 1.0 | 0.0 | 1.0 |
| PCGHONEA_2 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_4 | 1.0 | 0.0 | 1.0 |
| PCGHONEA_5 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_6 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_7 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_8 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_9 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_10 | 1.0 | 0.0 | 1.0 |
| PCGHONEA_11 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_12 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_13 | 1.0 | 0.0 | 1.0 |
| PCGHONEA_16 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_17 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_18 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_19 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_20 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_21 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_22 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_25 | 1.0 | 0.0 | 1.0 |
| PCGHONEA_27 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_30 | 1.0 | 0.0 | 1.0 |
| PCGHONEA_32 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_33 | 1.0 | 0.0 | 1.0 |
| PCGHONEA_35 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_36 | 1.0 | 0.0 | 1.0 |
| PCGHONEA_38 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_40 | 1.0 | 0.0 | 1.0 |
| PCGHONEA_43 | 1.0 | 0.0 | 1.0 |
| PCGHONEA_44 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_45 | 1.0 | 0.0 | 1.0 |
| PCGHONEA_52 | 1.0 | 0.0 | 1.0 |
| PCGHONEA_54 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_55 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_56 | 1.0 | 0.0 | 1.0 |
| PCGHONEA_58 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_59 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_60 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_61 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_62 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_63 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_64 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_65 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_66 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_67 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_68 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_69 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_70 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_71 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_72 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_73 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_74 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_75 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_76 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_78 | 0.0 | 1.0 | 0.0 |
| PCGHONEA_79 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PCGHONEA_8 | 654 | 29911 | False | Siphoviridae | VOG0879, VOG6307, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG4564, VOG0720, VOG4544, VOG3699, VOG0198, VOG6005, VOG0327, VOG7414, VOG3307, VOG5545, VOG4966, VOG8605, VOG9667, VOG9667, VOG4609, VOG4632, VOG6545, VOG0322, VOG6414, VOG4548, VOG4400, VOG5932, VOG0321 |
| PCGHONEA_69 | 2778 | 22118 | False | Siphoviridae | VOG0801, VOG5904, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG1329, VOG4555, VOG0692, VOG0691, VOG10227, VOG4746, VOG4618, VOG4131, VOG0198, VOG9218 |
Phigaro v2.4.0 (Database: Jan. 2024 release)