Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HNHDGBBD_48 | 236700 | 235996 | WalR | 2.88e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| HNHDGBBD_4 | 5526 | 5720 | CspR | 4.03e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| HNHDGBBD_4 | 5526 | 5723 | CspA | 6.19e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HNHDGBBD_2 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_4 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_5 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_6 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_7 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_8 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_9 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_10 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_11 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_12 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_13 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_14 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_15 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_16 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_17 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_18 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_19 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_20 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_21 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_22 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_23 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_24 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_25 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_26 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_27 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_28 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_29 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_30 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_31 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_32 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_34 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_35 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_39 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_40 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_42 | 1.0 | 0.0 | 1.0 |
| HNHDGBBD_43 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_45 | 1.0 | 0.0 | 1.0 |
| HNHDGBBD_48 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_49 | 1.0 | 0.0 | 1.0 |
| HNHDGBBD_53 | 1.0 | 0.0 | 1.0 |
| HNHDGBBD_55 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_56 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_58 | 1.0 | 0.0 | 1.0 |
| HNHDGBBD_62 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_64 | 0.0 | 1.0 | 0.0 |
| HNHDGBBD_66 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HNHDGBBD_22 | 1141 | 32662 | False | Siphoviridae | VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG6972, VOG0052, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG10904, VOG4548, VOG0321 |
| HNHDGBBD_23 | 60219 | 64286 | False | Siphoviridae | VOG4602, VOG8520, VOG8520, VOG4552, VOG7236, VOG1302 |
| HNHDGBBD_43 | 68562 | 97031 | False | Siphoviridae | VOG1302, VOG5073, VOG4566, VOG4566, VOG0189, VOG6005, VOG0198, VOG4841, VOG0741, VOG7810, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG8239, VOG0207, VOG4586, VOG0209, VOG0660, VOG5904, VOG4605, VOG4599, VOG10957 |
| HNHDGBBD_48 | 238458 | 248778 | False | Siphoviridae | VOG0204, VOG4553, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609, VOG4632 |
| HNHDGBBD_64 | 30418 | 64208 | False | Siphoviridae | VOG1637, VOG8294, VOG4705, VOG0804, VOG0870, VOG8438, VOG4619, VOG0801, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG0796, VOG0686, VOG10963, VOG0198, VOG0044, VOG4693, VOG5046, VOG6545, VOG0322, VOG0535, VOG0650, VOG3549 |
Phigaro v2.4.0 (Database: Jan. 2024 release)