Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IIGHNGHN_59 | 61117 | 60416 | WalR | 3.43e-108 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IIGHNGHN_24 | 3901 | 4998 | repUS73 | 1098 / 1101 | 92.53 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IIGHNGHN_1 | 1.0 | 0.0 | 1.0 |
| IIGHNGHN_3 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_7 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_9 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_13 | 1.0 | 0.0 | 1.0 |
| IIGHNGHN_17 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_19 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_20 | 1.0 | 0.0 | 1.0 |
| IIGHNGHN_21 | 1.0 | 0.0 | 1.0 |
| IIGHNGHN_22 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_23 | 1.0 | 0.0 | 1.0 |
| IIGHNGHN_24 | 1.0 | 0.0 | 1.0 |
| IIGHNGHN_25 | 1.0 | 0.0 | 1.0 |
| IIGHNGHN_26 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_27 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_28 | 1.0 | 0.0 | 1.0 |
| IIGHNGHN_29 | 1.0 | 0.0 | 1.0 |
| IIGHNGHN_30 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_31 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_32 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_33 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_34 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_35 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_36 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_37 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_38 | 1.0 | 0.0 | 1.0 |
| IIGHNGHN_39 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_40 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_41 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_42 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_43 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_45 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_47 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_48 | 1.0 | 0.0 | 1.0 |
| IIGHNGHN_49 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_50 | 1.0 | 0.0 | 1.0 |
| IIGHNGHN_52 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_54 | 1.0 | 0.0 | 1.0 |
| IIGHNGHN_57 | 1.0 | 0.0 | 1.0 |
| IIGHNGHN_59 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_60 | 1.0 | 0.0 | 1.0 |
| IIGHNGHN_62 | 1.0 | 0.0 | 1.0 |
| IIGHNGHN_64 | 1.0 | 0.0 | 1.0 |
| IIGHNGHN_66 | 1.0 | 0.0 | 1.0 |
| IIGHNGHN_68 | 1.0 | 0.0 | 1.0 |
| IIGHNGHN_69 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_70 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_73 | 0.0 | 1.0 | 0.0 |
| IIGHNGHN_76 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IIGHNGHN_28 | 6070 | 31608 | False | Myoviridae | VOG6382, VOG4845, VOG4691, VOG4550, VOG1348, VOG1433, VOG1956, VOG4910, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG8704, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544 |
| IIGHNGHN_64 | 680 | 7402 | False | Siphoviridae | VOG3643, VOG3307, VOG0044, VOG3480, VOG0052, VOG4566, VOG0514, VOG0226, VOG0283, VOG0535, VOG11003 |
| IIGHNGHN_76 | 15000 | 39409 | False | Siphoviridae | VOG4705, VOG9955, VOG10972, VOG4599, VOG4605, VOG5904, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4581, VOG4841, VOG5279 |
Phigaro v2.4.0 (Database: Jan. 2024 release)