Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IAGBFONJ_55 | 15069 | 14368 | WalR | 8.61e-109 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IAGBFONJ_12 | 5063 | 5992 | rep28 | 930 / 930 | 98.49 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IAGBFONJ_1 | 1.0 | 0.0 | 1.0 |
| IAGBFONJ_5 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_9 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_12 | 1.0 | 0.0 | 1.0 |
| IAGBFONJ_13 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_15 | 1.0 | 0.0 | 1.0 |
| IAGBFONJ_17 | 1.0 | 0.0 | 1.0 |
| IAGBFONJ_19 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_20 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_22 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_24 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_25 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_26 | 1.0 | 0.0 | 1.0 |
| IAGBFONJ_27 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_28 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_29 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_30 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_31 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_32 | 1.0 | 0.0 | 1.0 |
| IAGBFONJ_33 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_34 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_35 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_36 | 1.0 | 0.0 | 1.0 |
| IAGBFONJ_37 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_38 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_39 | 1.0 | 0.0 | 1.0 |
| IAGBFONJ_41 | 1.0 | 0.0 | 1.0 |
| IAGBFONJ_42 | 1.0 | 0.0 | 1.0 |
| IAGBFONJ_43 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_44 | 1.0 | 0.0 | 1.0 |
| IAGBFONJ_45 | 1.0 | 0.0 | 1.0 |
| IAGBFONJ_46 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_47 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_48 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_51 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_53 | 1.0 | 0.0 | 1.0 |
| IAGBFONJ_55 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_58 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_59 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_60 | 1.0 | 0.0 | 1.0 |
| IAGBFONJ_61 | 1.0 | 0.0 | 1.0 |
| IAGBFONJ_62 | 1.0 | 0.0 | 1.0 |
| IAGBFONJ_63 | 1.0 | 0.0 | 1.0 |
| IAGBFONJ_70 | 0.0 | 1.0 | 0.0 |
| IAGBFONJ_72 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IAGBFONJ_13 | 3719 | 16202 | False | Siphoviridae | VOG0480, VOG8908, VOG0198, VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609 |
| IAGBFONJ_32 | 5167 | 27867 | False | Myoviridae | VOG0870, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG0083, VOG4545, VOG4699, VOG1352, VOG1883, VOG1353, VOG1329, VOG4564 |
| IAGBFONJ_32 | 35811 | 38557 | False | Unknown | VOG4693, VOG7236 |
Phigaro v2.4.0 (Database: Jan. 2024 release)