Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PAKDJCJJ_251 | 100364 | 101065 | WalR | 1.50e-108 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PAKDJCJJ_162 | 405 | 1340 | rep28 | 936 / 936 | 97.97 | CP005948 |
| PAKDJCJJ_109 | 7947 | 9101 | rep31 | 1160 / 1155 | 89.31 | DQ489739 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PAKDJCJJ_1 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_2 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_3 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_5 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_7 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_8 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_9 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_10 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_11 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_12 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_14 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_15 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_16 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_17 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_18 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_19 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_20 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_21 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_22 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_23 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_24 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_25 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_26 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_29 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_30 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_32 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_33 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_35 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_36 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_37 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_38 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_39 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_40 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_42 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_43 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_45 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_46 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_47 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_48 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_50 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_52 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_54 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_55 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_56 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_57 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_59 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_60 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_61 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_62 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_63 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_64 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_65 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_66 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_67 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_69 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_70 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_71 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_72 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_73 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_74 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_75 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_76 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_77 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_78 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_79 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_80 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_81 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_82 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_83 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_84 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_86 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_87 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_88 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_90 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_91 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_92 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_95 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_96 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_97 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_100 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_101 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_102 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_104 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_105 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_107 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_109 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_110 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_112 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_114 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_115 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_116 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_117 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_127 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_131 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_132 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_135 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_136 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_138 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_141 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_142 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_144 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_145 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_148 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_150 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_151 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_153 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_154 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_156 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_161 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_162 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_164 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_166 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_167 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_168 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_176 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_177 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_180 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_184 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_185 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_189 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_190 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_192 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_202 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_206 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_208 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_210 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_212 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_215 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_216 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_219 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_223 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_226 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_227 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_230 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_232 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_234 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_236 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_238 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_241 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_243 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_245 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_247 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_248 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_249 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_251 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_252 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_253 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_255 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_256 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_257 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_258 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_259 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_260 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_261 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_262 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_263 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_264 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_266 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_267 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_269 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_270 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_271 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_272 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_273 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_274 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_275 | 0.0 | 1.0 | 0.0 |
| PAKDJCJJ_276 | 1.0 | 0.0 | 1.0 |
| PAKDJCJJ_277 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PAKDJCJJ_202 | 3289 | 35140 | False | Myoviridae | VOG0283, VOG0226, VOG10904, VOG0514, VOG10904, VOG8647, VOG0189, VOG0052, VOG0044, VOG6908, VOG0198, VOG5532, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG1353, VOG1883, VOG1352, VOG4699, VOG4910, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG6540, VOG5318 |
| PAKDJCJJ_215 | 3562 | 15200 | False | Siphoviridae | VOG0514, VOG0025, VOG4799, VOG0226, VOG0322, VOG0685, VOG11003, VOG0650, VOG10059, VOG1656, VOG8520, VOG0862, VOG1561, VOG0792 |
| PAKDJCJJ_277 | 2047 | 26316 | False | Myoviridae | VOG5446, VOG0796, VOG0275, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4710, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG5706, VOG4910, VOG1956, VOG1433, VOG1348, VOG0573, VOG4691 |
Phigaro v2.4.0 (Database: Jan. 2024 release)