Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CFBAJCOI_204 | 48712 | 49413 | WalR | 7.95e-109 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CFBAJCOI_54 | 284 | 1219 | rep28 | 936 / 936 | 97.97 | CP005948 |
| CFBAJCOI_205 | 716 | 1672 | repUS64 | 959 / 954 | 89.78 | JN601038 |
| CFBAJCOI_17 | 1812 | 2966 | rep31 | 1160 / 1155 | 89.31 | DQ489739 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CFBAJCOI_1 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_2 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_3 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_4 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_6 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_7 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_8 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_9 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_10 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_11 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_12 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_13 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_14 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_15 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_16 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_17 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_18 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_19 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_20 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_21 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_22 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_23 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_24 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_25 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_27 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_28 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_29 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_32 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_34 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_35 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_36 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_37 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_38 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_39 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_40 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_41 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_42 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_43 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_44 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_45 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_46 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_47 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_49 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_50 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_52 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_53 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_54 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_55 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_56 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_57 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_58 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_60 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_61 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_62 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_63 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_64 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_65 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_66 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_67 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_68 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_69 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_70 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_71 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_72 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_73 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_74 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_75 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_77 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_79 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_80 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_81 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_82 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_83 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_84 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_85 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_86 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_87 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_88 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_89 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_90 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_91 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_92 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_94 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_95 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_96 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_98 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_101 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_103 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_104 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_105 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_108 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_109 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_112 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_113 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_114 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_115 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_116 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_118 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_119 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_120 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_123 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_124 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_125 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_126 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_128 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_129 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_130 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_131 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_132 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_133 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_134 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_135 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_136 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_138 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_139 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_141 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_142 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_145 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_146 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_147 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_149 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_151 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_152 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_156 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_158 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_159 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_162 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_163 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_164 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_165 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_167 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_168 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_169 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_170 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_171 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_173 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_175 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_177 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_182 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_184 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_185 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_186 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_189 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_190 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_195 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_199 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_200 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_204 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_205 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_208 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_210 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_214 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_217 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_219 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_220 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_226 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_229 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_230 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_232 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_234 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_235 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_236 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_239 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_240 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_241 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_243 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_245 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_247 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_252 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_265 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_267 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_268 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_269 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_270 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_273 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_280 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_284 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_285 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_286 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_289 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_291 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_296 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_300 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_301 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_302 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_305 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_307 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_309 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_310 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_314 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_315 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_316 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_317 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_320 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_321 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_322 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_323 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_324 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_325 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_326 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_327 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_328 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_329 | 1.0 | 0.0 | 1.0 |
| CFBAJCOI_330 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_331 | 0.0 | 1.0 | 0.0 |
| CFBAJCOI_332 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CFBAJCOI_4 | 2349 | 26618 | False | Myoviridae | VOG4845, VOG4691, VOG0573, VOG1348, VOG1433, VOG1956, VOG4910, VOG5706, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4710, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG4544, VOG0275, VOG0796, VOG5446 |
| CFBAJCOI_168 | 3556 | 17667 | False | Myoviridae | VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG4910, VOG6684, VOG4699, VOG1352, VOG1883, VOG1353 |
| CFBAJCOI_220 | 6249 | 17887 | False | Siphoviridae | VOG0792, VOG1561, VOG0862, VOG8520, VOG1656, VOG10059, VOG0650, VOG11003, VOG0685, VOG0322, VOG0226, VOG4799, VOG0025 |
Phigaro v2.4.0 (Database: Jan. 2024 release)