Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PBFJAHFA_119 | 9049 | 8348 | WalR | 1.13e-108 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PBFJAHFA_105 | 2934 | 3855 | rep28 | 922 / 936 | 98.05 | CP005948 |
| PBFJAHFA_54 | 7141 | 8295 | rep31 | 1160 / 1155 | 89.31 | DQ489739 |
| PBFJAHFA_124 | 90 | 1014 | repUS64 | 930 / 954 | 85.48 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PBFJAHFA_2 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_7 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_9 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_10 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_11 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_13 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_14 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_15 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_19 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_20 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_21 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_22 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_23 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_24 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_28 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_30 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_31 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_40 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_45 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_48 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_54 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_58 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_60 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_65 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_66 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_68 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_73 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_74 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_76 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_84 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_85 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_90 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_96 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_100 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_101 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_103 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_104 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_105 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_106 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_107 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_108 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_109 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_110 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_111 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_112 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_113 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_114 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_115 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_116 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_117 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_118 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_119 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_121 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_122 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_123 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_124 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_125 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_126 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_129 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_130 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_131 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_132 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_133 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_134 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_135 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_136 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_138 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_140 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_141 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_142 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_144 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_145 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_147 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_148 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_149 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_150 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_152 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_153 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_155 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_156 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_157 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_158 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_159 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_160 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_161 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_162 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_163 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_164 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_165 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_166 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_167 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_168 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_169 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_171 | 1.0 | 0.0 | 1.0 |
| PBFJAHFA_173 | 0.0 | 1.0 | 0.0 |
| PBFJAHFA_174 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PBFJAHFA_136 | 2564 | 11351 | False | Myoviridae | VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG6163 |
Phigaro v2.4.0 (Database: Jan. 2024 release)