Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CBPOHOFE_54 | 47877 | 48578 | WalR | 7.71e-109 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CBPOHOFE_121 | 4948 | 5880 | rep28 | 933 / 936 | 98.18 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CBPOHOFE_2 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_3 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_4 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_7 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_9 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_13 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_16 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_18 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_19 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_20 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_21 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_23 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_33 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_37 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_40 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_44 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_45 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_48 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_50 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_51 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_53 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_54 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_55 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_56 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_58 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_61 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_62 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_63 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_64 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_65 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_66 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_67 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_68 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_69 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_70 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_71 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_72 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_75 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_76 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_77 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_78 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_79 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_80 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_81 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_82 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_83 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_84 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_85 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_87 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_88 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_89 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_90 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_92 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_93 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_94 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_95 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_96 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_97 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_98 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_99 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_100 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_101 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_104 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_105 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_106 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_107 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_111 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_112 | 0.0 | 1.0 | 0.0 |
| CBPOHOFE_113 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_114 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_117 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_119 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_120 | 1.0 | 0.0 | 1.0 |
| CBPOHOFE_121 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CBPOHOFE_58 | 2562 | 32887 | False | Myoviridae | VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG6163, VOG5068, VOG6131, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4778, VOG1942, VOG2779, VOG1915, VOG4865, VOG4564, VOG1912, VOG10227, VOG0796, VOG0198, VOG4010, VOG0044, VOG6005, VOG4693, VOG7236, VOG0186 |
| CBPOHOFE_90 | 2280 | 26833 | False | Siphoviridae | VOG9955, VOG10972, VOG4599, VOG4605, VOG8263, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0045 |
Phigaro v2.4.0 (Database: Jan. 2024 release)