Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CEGJGJFI_117 | 8513 | 7812 | WalR | 9.94e-109 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CEGJGJFI_105 | 9923 | 10957 | rep38 | 1045 / 1104 | 83.44 | CP002655 |
| CEGJGJFI_63 | 947 | 1876 | rep28 | 935 / 936 | 82.35 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CEGJGJFI_5 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_8 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_11 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_15 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_18 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_21 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_22 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_25 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_27 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_29 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_30 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_31 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_36 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_40 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_42 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_43 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_45 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_46 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_49 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_50 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_52 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_53 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_55 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_56 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_57 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_58 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_60 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_63 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_65 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_66 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_67 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_68 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_69 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_71 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_73 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_74 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_75 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_76 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_77 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_78 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_79 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_80 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_81 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_82 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_83 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_84 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_85 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_86 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_89 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_90 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_91 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_92 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_93 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_94 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_95 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_97 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_98 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_99 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_100 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_101 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_102 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_103 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_104 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_105 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_106 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_107 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_108 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_110 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_113 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_114 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_115 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_116 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_117 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_118 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_119 | 0.0 | 1.0 | 0.0 |
| CEGJGJFI_120 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_122 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_124 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_125 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_126 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_127 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_128 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_131 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_133 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_134 | 1.0 | 0.0 | 1.0 |
| CEGJGJFI_135 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CEGJGJFI_127 | 5003 | 38642 | False | Myoviridae | VOG4845, VOG4691, VOG2349, VOG0573, VOG1348, VOG1433, VOG4865, VOG4910, VOG4699, VOG1352, VOG1883, VOG1353, VOG5795, VOG1329, VOG7118, VOG4564, VOG0720, VOG8453, VOG7407, VOG0611, VOG4699, VOG1315, VOG0198, VOG6005, VOG4693, VOG7236, VOG5733, VOG4855, VOG0186, VOG1309 |
Phigaro v2.4.0 (Database: Jan. 2024 release)