Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DMFHIFEF_163 | 11199 | 10498 | WalR | 1.53e-108 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DMFHIFEF_1 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_2 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_3 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_4 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_5 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_6 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_7 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_8 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_9 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_10 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_11 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_12 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_13 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_14 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_15 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_16 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_18 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_19 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_20 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_21 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_22 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_23 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_25 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_26 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_28 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_30 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_32 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_33 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_34 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_35 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_36 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_37 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_38 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_39 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_40 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_41 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_42 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_43 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_44 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_45 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_46 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_48 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_49 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_51 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_53 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_54 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_55 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_57 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_58 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_62 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_63 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_64 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_66 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_69 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_71 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_72 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_73 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_76 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_77 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_78 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_80 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_82 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_83 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_84 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_86 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_87 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_88 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_92 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_94 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_95 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_98 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_99 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_101 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_102 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_103 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_105 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_108 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_111 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_112 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_114 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_115 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_116 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_117 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_119 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_120 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_121 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_123 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_124 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_125 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_126 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_127 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_128 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_129 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_130 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_131 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_132 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_133 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_134 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_135 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_136 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_138 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_139 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_140 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_141 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_142 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_143 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_144 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_145 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_146 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_147 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_148 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_149 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_150 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_151 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_152 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_153 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_154 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_155 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_156 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_157 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_158 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_160 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_161 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_162 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_163 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_165 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_166 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_167 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_168 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_169 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_170 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_171 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_172 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_173 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_174 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_175 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_176 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_177 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_178 | 1.0 | 0.0 | 1.0 |
| DMFHIFEF_179 | 0.0 | 1.0 | 0.0 |
| DMFHIFEF_181 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DMFHIFEF_38 | 641 | 24117 | False | Myoviridae | VOG5176, VOG0796, VOG4544, VOG2649, VOG10227, VOG1912, VOG4564, VOG4918, VOG1915, VOG2779, VOG1942, VOG4778, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG8263, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691 |
| DMFHIFEF_112 | 2245 | 23228 | False | Myoviridae | VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG1353, VOG1883, VOG1352, VOG4699, VOG6684, VOG5904, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691 |
| DMFHIFEF_177 | 484 | 23230 | False | Myoviridae | VOG3298, VOG0565, VOG0870, VOG4845, VOG4691, VOG2349, VOG0573, VOG1348, VOG1433, VOG4865, VOG4910, VOG4699, VOG1352, VOG1883, VOG1353, VOG5795, VOG1329, VOG4564, VOG0720 |
Phigaro v2.4.0 (Database: Jan. 2024 release)