Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LIEPOFLN_1 | 0.0 | 1.0 | 0.0 |
| LIEPOFLN_2 | 0.0 | 1.0 | 0.0 |
| LIEPOFLN_3 | 1.0 | 0.0 | 1.0 |
| LIEPOFLN_4 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LIEPOFLN_1 | 837307 | 839409 | False | Siphoviridae | VOG9667, VOG1563, VOG0181, VOG0267, VOG0267, VOG0267 |
| LIEPOFLN_1 | 1014684 | 1041807 | False | Siphoviridae | VOG4606, VOG0198, VOG4570, VOG1345, VOG4693, VOG4841, VOG4581, VOG1886, VOG4556, VOG4568, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG4545, VOG0801, VOG10972, VOG4856, VOG1637, VOG0054 |
| LIEPOFLN_1 | 1073782 | 1105239 | False | Siphoviridae | VOG0283, VOG0514, VOG0226, VOG8647, VOG8474, VOG4552, VOG3307, VOG5395, VOG1183, VOG4039, VOG0198, VOG1323, VOG0866, VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG0058, VOG4553, VOG0204, VOG0205, VOG0207, VOG0209, VOG4545, VOG0801, VOG3462, VOG5904, VOG10972, VOG0565, VOG9997, VOG4626 |
| LIEPOFLN_1 | 1423624 | 1458444 | False | Siphoviridae | VOG6550, VOG5601, VOG4687, VOG3462, VOG0801, VOG4545, VOG0725, VOG0799, VOG0724, VOG1353, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG3699, VOG0376, VOG9091, VOG0198, VOG4039, VOG1183, VOG0536, VOG5133, VOG0189, VOG2054, VOG5046, VOG0226, VOG0514, VOG0906, VOG5278, VOG11003, VOG3049, VOG3478, VOG0707, VOG9469, VOG7881, VOG5063 |
| LIEPOFLN_1 | 1705886 | 1738786 | True | Siphoviridae | VOG11003, VOG0052, VOG7438, VOG1047, VOG0021, VOG0026, VOG4606, VOG0327, VOG4548, VOG0198, VOG6154, VOG4581, VOG4571, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG9502, VOG0221, VOG0221, VOG9671, VOG0350, VOG1844 |
Phigaro v2.4.0 (Database: Jan. 2024 release)