safety

PPRS ARGs VFs PGs Plasmid Prophage IS elements

ARGs	VFs	PGs	PPRS
6	1	1	6.16

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Comprehensive Antibiotic Resistance Database (CARD)

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
DEKLBMIG_1	4208928	4209575	Alkalihalobacillus clausii chloramphenicol acetyltransferase	ARO:3004452	Acla_ACT_CHL	88.68	94.30	AY238971.1
DEKLBMIG_1	3784837	3785761	BCL-1	ARO:3004749	BCL-1	100.00	98.05	EF540343.1
DEKLBMIG_1	3781672	3782442	ANT(4')-Ib	ARO:3003905	ANT(4')-Ib	100.00	100.00	EF540343.1
DEKLBMIG_1	2826837	2827889	clbC	ARO:3002816	clbC	100.00	100.00	AP006627.1
DEKLBMIG_1	1621825	1622670	Erm(34)	ARO:3000600	Erm(34)	96.80	100.00	AY234334.1

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
DEKLBMIG_1	3781672	3782442	ant(4')-Ib	Amikacin, Tobramycin, Isepamicin, Dibekacin	100.00	100.00	AJ506108
DEKLBMIG_1	4208904	4209573	cat	Chloramphenicol	97.49	97.38	AY238971
DEKLBMIG_1	1621825	1622663	erm(34)	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	95.47	99.17	AY234334

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
DEKLBMIG_1	3781672	3782439	aadD2	aminoglycoside O-nucleotidyltransferase ANT(4')-Ib	EXACTX	100.00	100.00	WP_035202393.1
DEKLBMIG_1	3784855	3785757	blaBCL-1	class A beta-lactamase BCL-1	ALLELEX	100.00	100.00	WP_065825670.1
DEKLBMIG_1	4208931	4209575	catA	type A-10 chloramphenicol O-acetyltransferase	EXACTX	100.00	100.00	WP_035203840.1
DEKLBMIG_1	2826837	2827886	clbB	23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB	EXACTX	100.00	100.00	WP_011245929.1
DEKLBMIG_1	1621825	1622664	erm(34)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34)	BLASTX	97.14	99.64	WP_063844504.1
DEKLBMIG_1	1517689	1520280	rphC	rifamycin-inactivating phosphotransferase RphC	BLASTX	80.14	100.00	WP_087347987.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
DEKLBMIG_1	317472	318122	hlyIII	0.0	Hemolysin III	Exotoxin	99.69	100.00	WP_011247375

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
DEKLBMIG_1	3730220	3731356	tufA	0.0	elongation factor Tu	87.33	95.69	AHM69299

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

PlasmidFinder

Query ID	Begin	End	Plasmid	Query / Template	Identity	Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID	Prediction	Chromosome	Plasmid
DEKLBMIG_1	0.0	1.0	0.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Phigaro

Query ID	Begin	End	Transposable	Taxonomy	pVOGs
DEKLBMIG_1	4145973	4167654	False	Siphoviridae	VOG0796, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4623, VOG0816, VOG5660, VOG0724, VOG0799, VOG0725, VOG6163, VOG0801, VOG4619, VOG0565, VOG4669, VOG0753, VOG0602

Phigaro v2.4.0 (Database: Jan. 2024 release)