Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 9 | 0 | 0 | 9.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FHKEPMMC_3 | 481100 | 481915 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
| FHKEPMMC_3 | 476498 | 478472 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| FHKEPMMC_5 | 475976 | 477901 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| FHKEPMMC_3 | 463941 | 464849 | aad(6) | ARO:3002628 | aad(6) | 100.00 | 109.42 | AY712687.1 |
| FHKEPMMC_3 | 463402 | 463932 | SAT-4 | ARO:3002897 | SAT-4 | 99.43 | 97.78 | U01945.1 |
| FHKEPMMC_3 | 461256 | 462051 | APH(3')-IIIa | ARO:3002647 | APH(3')-IIIa | 100.00 | 98.86 | CP004067.1 |
| FHKEPMMC_6 | 242587 | 243552 | CfxA2 | ARO:3003002 | CfxA2 | 99.38 | 100.00 | AF118110.1 |
| FHKEPMMC_15 | 48879 | 49931 | crxA | ARO:3007118 | crxA | 100.00 | 100.00 | JAGZKL010000021.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FHKEPMMC_3 | 463941 | 464849 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | AF330699 |
| FHKEPMMC_3 | 461256 | 462050 | aph(3')-III | Kanamycin, Amikacin, Neomycin, Butirosin, Isepamicin, Lividomycin, Paromomycin, Ribostamycin | 100.00 | 100.00 | M26832 |
| FHKEPMMC_3 | 481100 | 481915 | sul2 | Sulfamethoxazole | 100.00 | 100.00 | AY034138 |
| FHKEPMMC_3 | 476498 | 478423 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| FHKEPMMC_6 | 242587 | 243552 | cfxA3 | Ampicillin | 99.69 | 100.00 | AF472622 |
| FHKEPMMC_6 | 242587 | 243552 | cfxA4 | Unknown Beta-lactam | 99.69 | 100.00 | AY769933 |
| FHKEPMMC_6 | 242587 | 243552 | cfxA5 | Unknown Beta-lactam | 99.69 | 100.00 | AY769934 |
| FHKEPMMC_6 | 242587 | 243552 | cfxA | Cefoxitin, Ampicillin | 99.69 | 100.00 | U38243 |
| FHKEPMMC_3 | 466480 | 467697 | mef(A) | Erythromycin, Azithromycin | 95.07 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FHKEPMMC_3 | 463944 | 464849 | ant(6)-Ia | aminoglycoside nucleotidyltransferase ANT(6)-Ia | EXACTX | 100.00 | 100.00 | WP_001255866.1 |
| FHKEPMMC_3 | 461259 | 462050 | aph(3')-IIIa | aminoglycoside O-phosphotransferase APH(3')-IIIa | EXACTX | 100.00 | 100.00 | WP_001096887.1 |
| FHKEPMMC_15 | 48879 | 49928 | crxA | CrxA family subclass B1 metallo-beta-lactamase | EXACTX | 100.00 | 100.00 | WP_262761957.1 |
| FHKEPMMC_3 | 463405 | 463944 | sat4 | streptothricin N-acetyltransferase Sat4 | EXACTX | 100.00 | 100.00 | WP_000627290.1 |
| FHKEPMMC_3 | 481103 | 481915 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| FHKEPMMC_3 | 476501 | 478423 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| FHKEPMMC_5 | 475976 | 477898 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| FHKEPMMC_6 | 242590 | 243552 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.38 | 100.00 | WP_004339683.1 |
| FHKEPMMC_3 | 466483 | 467697 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 98.77 | 99.26 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FHKEPMMC_1 | 0.0 | 1.0 | 0.0 |
| FHKEPMMC_2 | 0.0 | 1.0 | 0.0 |
| FHKEPMMC_3 | 0.0 | 1.0 | 0.0 |
| FHKEPMMC_4 | 0.0 | 1.0 | 0.0 |
| FHKEPMMC_5 | 0.0 | 1.0 | 0.0 |
| FHKEPMMC_6 | 0.0 | 1.0 | 0.0 |
| FHKEPMMC_7 | 0.0 | 1.0 | 0.0 |
| FHKEPMMC_8 | 0.0 | 1.0 | 0.0 |
| FHKEPMMC_9 | 0.0 | 1.0 | 0.0 |
| FHKEPMMC_10 | 0.0 | 1.0 | 0.0 |
| FHKEPMMC_11 | 0.0 | 1.0 | 0.0 |
| FHKEPMMC_12 | 0.0 | 1.0 | 0.0 |
| FHKEPMMC_13 | 0.0 | 1.0 | 0.0 |
| FHKEPMMC_14 | 0.0 | 1.0 | 0.0 |
| FHKEPMMC_15 | 0.0 | 1.0 | 0.0 |
| FHKEPMMC_16 | 0.0 | 1.0 | 0.0 |
| FHKEPMMC_17 | 0.0 | 1.0 | 0.0 |
| FHKEPMMC_18 | 0.0 | 1.0 | 0.0 |
| FHKEPMMC_19 | 0.0 | 1.0 | 0.0 |
| FHKEPMMC_20 | 0.0 | 1.0 | 0.0 |
| FHKEPMMC_21 | 0.0 | 1.0 | 0.0 |
| FHKEPMMC_22 | 0.0 | 1.0 | 0.0 |
| FHKEPMMC_24 | 1.0 | 0.0 | 1.0 |
| FHKEPMMC_26 | 1.0 | 0.0 | 1.0 |
| FHKEPMMC_29 | 1.0 | 0.0 | 1.0 |
| FHKEPMMC_30 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)