Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NFOMAFFO_22 | 192225 | 195908 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 103.46 | NC_008618.1 |
| NFOMAFFO_5 | 16070 | 19396 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.73 | 100.09 | CP001840.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NFOMAFFO_1 | 0.0 | 1.0 | 0.0 |
| NFOMAFFO_2 | 0.0 | 1.0 | 0.0 |
| NFOMAFFO_3 | 0.0 | 1.0 | 0.0 |
| NFOMAFFO_4 | 0.0 | 1.0 | 0.0 |
| NFOMAFFO_5 | 0.0 | 1.0 | 0.0 |
| NFOMAFFO_6 | 0.0 | 1.0 | 0.0 |
| NFOMAFFO_7 | 0.0 | 1.0 | 0.0 |
| NFOMAFFO_8 | 0.0 | 1.0 | 0.0 |
| NFOMAFFO_9 | 0.0 | 1.0 | 0.0 |
| NFOMAFFO_10 | 0.0 | 1.0 | 0.0 |
| NFOMAFFO_11 | 0.0 | 1.0 | 0.0 |
| NFOMAFFO_12 | 0.0 | 1.0 | 0.0 |
| NFOMAFFO_14 | 1.0 | 0.0 | 1.0 |
| NFOMAFFO_15 | 1.0 | 0.0 | 1.0 |
| NFOMAFFO_16 | 1.0 | 0.0 | 1.0 |
| NFOMAFFO_17 | 1.0 | 0.0 | 1.0 |
| NFOMAFFO_18 | 0.0 | 1.0 | 0.0 |
| NFOMAFFO_22 | 0.0 | 1.0 | 0.0 |
| NFOMAFFO_30 | 0.0 | 1.0 | 0.0 |
| NFOMAFFO_31 | 0.0 | 1.0 | 0.0 |
| NFOMAFFO_32 | 0.0 | 1.0 | 0.0 |
| NFOMAFFO_33 | 0.0 | 1.0 | 0.0 |
| NFOMAFFO_34 | 0.0 | 1.0 | 0.0 |
| NFOMAFFO_35 | 0.0 | 1.0 | 0.0 |
| NFOMAFFO_36 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NFOMAFFO_3 | 34335 | 43880 | False | Siphoviridae | VOG0243, VOG5532, VOG0944, VOG1563, VOG4567 |
| NFOMAFFO_11 | 105536 | 127079 | False | Myoviridae | VOG5012, VOG2090, VOG8190, VOG0052, VOG0382, VOG5689, VOG11016, VOG4548, VOG0384 |
| NFOMAFFO_11 | 197183 | 204863 | False | Siphoviridae | VOG2090, VOG11075, VOG0585, VOG3304, VOG0010, VOG4602 |
| NFOMAFFO_34 | 46036 | 71452 | False | Siphoviridae | VOG0991, VOG3578, VOG4599, VOG4605, VOG5793, VOG5601, VOG1581, VOG0880, VOG4553, VOG4576, VOG0720, VOG5101, VOG2560, VOG9852, VOG4841, VOG0376, VOG2545, VOG2038, VOG2538, VOG0943, VOG5782 |
| NFOMAFFO_34 | 79395 | 93018 | False | Siphoviridae | VOG5277, VOG4602, VOG4602, VOG0275, VOG4571, VOG2842, VOG5539, VOG3594, VOG1724, VOG9874 |
Phigaro v2.4.0 (Database: Jan. 2024 release)