Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CFHMEBGC_45 | 5242 | 5865 | Campylobacter coli chloramphenicol acetyltransferase | ARO:3004454 | Ccol_ACT_CHL | 95.65 | 100.00 | M35190.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CFHMEBGC_45 | 5242 | 5865 | cat | Chloramphenicol | 96.79 | 100.00 | M35190 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CFHMEBGC_45 | 5248 | 5865 | catA13 | type A-13 chloramphenicol O-acetyltransferase | BLASTX | 100.00 | 99.52 | WP_043774378.1 |
| CFHMEBGC_12 | 131 | 331 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | PARTIALX | 80.60 | 89.33 | WP_021418929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CFHMEBGC_1 | 0.0 | 1.0 | 0.0 |
| CFHMEBGC_2 | 0.0 | 1.0 | 0.0 |
| CFHMEBGC_3 | 0.0 | 1.0 | 0.0 |
| CFHMEBGC_4 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_5 | 0.0 | 1.0 | 0.0 |
| CFHMEBGC_6 | 0.0 | 1.0 | 0.0 |
| CFHMEBGC_8 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_9 | 0.0 | 1.0 | 0.0 |
| CFHMEBGC_11 | 0.0 | 1.0 | 0.0 |
| CFHMEBGC_12 | 0.0 | 1.0 | 0.0 |
| CFHMEBGC_13 | 0.0 | 1.0 | 0.0 |
| CFHMEBGC_14 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_15 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_16 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_17 | 0.0 | 1.0 | 0.0 |
| CFHMEBGC_18 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_19 | 0.0 | 1.0 | 0.0 |
| CFHMEBGC_20 | 0.0 | 1.0 | 0.0 |
| CFHMEBGC_21 | 0.0 | 1.0 | 0.0 |
| CFHMEBGC_22 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_23 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_24 | 0.0 | 1.0 | 0.0 |
| CFHMEBGC_25 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_26 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_27 | 0.0 | 1.0 | 0.0 |
| CFHMEBGC_28 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_29 | 0.0 | 1.0 | 0.0 |
| CFHMEBGC_30 | 0.0 | 1.0 | 0.0 |
| CFHMEBGC_31 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_32 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_33 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_34 | 0.0 | 1.0 | 0.0 |
| CFHMEBGC_35 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_36 | 0.0 | 1.0 | 0.0 |
| CFHMEBGC_37 | 0.0 | 1.0 | 0.0 |
| CFHMEBGC_38 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_39 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_40 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_41 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_42 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_43 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_44 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_45 | 0.0 | 1.0 | 0.0 |
| CFHMEBGC_46 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_47 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_48 | 1.0 | 0.0 | 1.0 |
| CFHMEBGC_49 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CFHMEBGC_2 | 202466 | 230771 | True | Siphoviridae | VOG1931, |
| CFHMEBGC_2 | 734994 | 740142 | False | Unknown | VOG7527, |
Phigaro v2.4.0 (Database: Jan. 2024 release)