Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 10 | 10.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FKLNPPBC_64 | 32642 | 33820 | tufA | 0.0 | elongation factor Tu | 85.75 | 99.49 | AHM69299 |
| FKLNPPBC_59 | 27058 | 28563 | atpA | 0.0 | ATP synthase subunit alpha | 80.08 | 100.00 | ABD31377 |
| FKLNPPBC_113 | 4584 | 5453 | pdxS | 1.12e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| FKLNPPBC_13 | 5235 | 4459 | CodY | 1.10e-128 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| FKLNPPBC_13 | 5235 | 4459 | codY | 5.29e-125 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| FKLNPPBC_100 | 27915 | 27346 | ClpP | 1.22e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| FKLNPPBC_121 | 15032 | 14346 | WalR | 6.62e-104 | transcriptional regulatory protein | 80.79 | 97.44 | EPH95667 |
| FKLNPPBC_60 | 98644 | 99036 | spxA1 | 7.96e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| FKLNPPBC_60 | 98644 | 99036 | spx | 1.72e-67 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| FKLNPPBC_124 | 17968 | 18210 | SpoVG | 7.99e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| FKLNPPBC_93 | 9068 | 8871 | CspA | 3.00e-30 | cold shock protein | 83.33 | 100.00 | CAA62903 |
| FKLNPPBC_53 | 42987 | 42793 | CspD | 1.74e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| FKLNPPBC_53 | 42987 | 42790 | CspB | 1.17e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FKLNPPBC_1 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_2 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_3 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_5 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_9 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_10 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_11 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_12 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_13 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_14 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_15 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_16 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_18 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_19 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_24 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_25 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_26 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_29 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_31 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_32 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_35 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_37 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_39 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_40 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_41 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_42 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_43 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_44 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_45 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_46 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_47 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_48 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_49 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_50 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_51 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_52 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_53 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_54 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_55 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_56 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_57 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_58 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_59 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_60 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_61 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_62 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_63 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_64 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_65 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_66 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_67 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_68 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_69 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_70 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_71 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_72 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_73 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_74 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_75 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_76 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_77 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_78 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_79 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_80 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_81 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_82 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_83 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_84 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_85 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_86 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_87 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_88 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_89 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_90 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_91 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_92 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_93 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_94 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_95 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_96 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_97 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_98 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_99 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_100 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_101 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_102 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_103 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_104 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_105 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_106 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_107 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_108 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_110 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_111 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_112 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_113 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_114 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_115 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_116 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_117 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_118 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_119 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_120 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_121 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_122 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_123 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_124 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_125 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_128 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_129 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_130 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_131 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_133 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_135 | 0.0 | 1.0 | 0.0 |
| FKLNPPBC_137 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_138 | 1.0 | 0.0 | 1.0 |
| FKLNPPBC_139 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FKLNPPBC_73 | 20052 | 61117 | False | Siphoviridae | VOG6778, VOG0275, VOG4602, VOG4548, VOG0982, VOG9858, VOG9667, VOG11075, VOG6495, VOG0181, VOG1878, VOG4690, VOG8647, VOG0226, VOG4552, VOG0198, VOG0275, VOG4841, VOG4581, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0704, VOG4586, VOG5852, VOG6163, VOG0801, VOG3462, VOG8438, VOG6243, VOG8580, VOG0753, VOG0136, VOG4918 |
| FKLNPPBC_116 | 5319 | 35000 | False | Siphoviridae | VOG6373, VOG4619, VOG0801, VOG6163, VOG4557, VOG5660, VOG3888, VOG1581, VOG4711, VOG3210, VOG4568, VOG7708, VOG7407, VOG0611, VOG0198, VOG8445, VOG3553, VOG1298, VOG6440, VOG0195, VOG0536, VOG0397, VOG9996, VOG0025, VOG9600, VOG4855, VOG1309, VOG4600, VOG1878, VOG3549, VOG8241, VOG4552, VOG9667, VOG9667 |
Phigaro v2.4.0 (Database: Jan. 2024 release)