Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PGDJLMLK_39 | 54642 | 55346 | WalR | 1.94e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| PGDJLMLK_15 | 19838 | 20035 | CspR | 1.52e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PGDJLMLK_1 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_2 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_3 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_4 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_5 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_6 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_7 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_8 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_9 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_10 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_11 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_12 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_13 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_14 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_15 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_16 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_17 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_18 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_19 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_20 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_21 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_22 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_23 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_26 | 1.0 | 0.0 | 1.0 |
| PGDJLMLK_27 | 1.0 | 0.0 | 1.0 |
| PGDJLMLK_33 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_36 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_37 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_38 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_39 | 0.0 | 1.0 | 0.0 |
| PGDJLMLK_40 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PGDJLMLK_14 | 825 | 35923 | False | Siphoviridae | VOG4918, VOG0638, VOG0054, VOG1637, VOG5008, VOG4828, VOG4633, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG4549, VOG10904, VOG4570, VOG0198, VOG3643, VOG2820, VOG9759, VOG9741, VOG4693, VOG6623, VOG7018, VOG7735, VOG0025, VOG4799, VOG3642, VOG10867, VOG0181, VOG4552, VOG4552 |
| PGDJLMLK_22 | 170483 | 181758 | False | Siphoviridae | VOG10397, VOG1581, VOG4632, VOG4609, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589 |
Phigaro v2.4.0 (Database: Jan. 2024 release)