Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ENDNJGDH_37 | 63243 | 62539 | WalR | 1.63e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| ENDNJGDH_43 | 17609 | 17412 | CspR | 4.90e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ENDNJGDH_1 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_2 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_13 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_24 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_30 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_31 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_32 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_33 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_34 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_35 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_36 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_37 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_38 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_39 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_40 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_41 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_42 | 1.0 | 0.0 | 1.0 |
| ENDNJGDH_43 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_44 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_45 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_46 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_47 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_48 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_49 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_50 | 1.0 | 0.0 | 1.0 |
| ENDNJGDH_51 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_52 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_53 | 1.0 | 0.0 | 1.0 |
| ENDNJGDH_54 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_55 | 1.0 | 0.0 | 1.0 |
| ENDNJGDH_56 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_57 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_58 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_59 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_60 | 1.0 | 0.0 | 1.0 |
| ENDNJGDH_61 | 1.0 | 0.0 | 1.0 |
| ENDNJGDH_62 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_63 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_64 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_65 | 1.0 | 0.0 | 1.0 |
| ENDNJGDH_66 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_67 | 1.0 | 0.0 | 1.0 |
| ENDNJGDH_69 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_70 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_71 | 1.0 | 0.0 | 1.0 |
| ENDNJGDH_72 | 1.0 | 0.0 | 1.0 |
| ENDNJGDH_73 | 1.0 | 0.0 | 1.0 |
| ENDNJGDH_74 | 1.0 | 0.0 | 1.0 |
| ENDNJGDH_76 | 1.0 | 0.0 | 1.0 |
| ENDNJGDH_77 | 1.0 | 0.0 | 1.0 |
| ENDNJGDH_79 | 1.0 | 0.0 | 1.0 |
| ENDNJGDH_80 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_81 | 1.0 | 0.0 | 1.0 |
| ENDNJGDH_82 | 1.0 | 0.0 | 1.0 |
| ENDNJGDH_83 | 1.0 | 0.0 | 1.0 |
| ENDNJGDH_84 | 1.0 | 0.0 | 1.0 |
| ENDNJGDH_91 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_102 | 0.0 | 1.0 | 0.0 |
| ENDNJGDH_113 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ENDNJGDH_24 | 76454 | 88199 | False | Siphoviridae | VOG3304, VOG0862, VOG8520, VOG10059, VOG0181, VOG10867, VOG6450, VOG4967, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG5998, VOG6795, VOG5562 |
| ENDNJGDH_37 | 129178 | 139927 | False | Siphoviridae | VOG1581, VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204 |
| ENDNJGDH_45 | 19186 | 28702 | False | Siphoviridae | VOG4602, VOG6495, VOG5353, VOG4552, VOG0181, VOG10867, VOG4600, VOG1309, VOG11003, VOG4566, VOG0189, VOG7363, VOG5998, VOG5562 |
Phigaro v2.4.0 (Database: Jan. 2024 release)