Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GMAGLGJH_23 | 159360 | 160064 | WalR | 1.63e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| GMAGLGJH_27 | 17610 | 17413 | CspR | 4.90e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GMAGLGJH_1 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_2 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_13 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_15 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_16 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_17 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_18 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_19 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_20 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_21 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_22 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_23 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_24 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_25 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_26 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_27 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_28 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_29 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_30 | 1.0 | 0.0 | 1.0 |
| GMAGLGJH_31 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_32 | 1.0 | 0.0 | 1.0 |
| GMAGLGJH_33 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_34 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_35 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_36 | 1.0 | 0.0 | 1.0 |
| GMAGLGJH_37 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_38 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_39 | 1.0 | 0.0 | 1.0 |
| GMAGLGJH_40 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_41 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_42 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_43 | 1.0 | 0.0 | 1.0 |
| GMAGLGJH_44 | 1.0 | 0.0 | 1.0 |
| GMAGLGJH_45 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_46 | 1.0 | 0.0 | 1.0 |
| GMAGLGJH_47 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_48 | 1.0 | 0.0 | 1.0 |
| GMAGLGJH_49 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_50 | 1.0 | 0.0 | 1.0 |
| GMAGLGJH_51 | 1.0 | 0.0 | 1.0 |
| GMAGLGJH_53 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_54 | 1.0 | 0.0 | 1.0 |
| GMAGLGJH_55 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_56 | 1.0 | 0.0 | 1.0 |
| GMAGLGJH_57 | 1.0 | 0.0 | 1.0 |
| GMAGLGJH_58 | 1.0 | 0.0 | 1.0 |
| GMAGLGJH_60 | 1.0 | 0.0 | 1.0 |
| GMAGLGJH_61 | 1.0 | 0.0 | 1.0 |
| GMAGLGJH_62 | 1.0 | 0.0 | 1.0 |
| GMAGLGJH_63 | 1.0 | 0.0 | 1.0 |
| GMAGLGJH_64 | 1.0 | 0.0 | 1.0 |
| GMAGLGJH_65 | 1.0 | 0.0 | 1.0 |
| GMAGLGJH_66 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_67 | 1.0 | 0.0 | 1.0 |
| GMAGLGJH_68 | 1.0 | 0.0 | 1.0 |
| GMAGLGJH_69 | 1.0 | 0.0 | 1.0 |
| GMAGLGJH_77 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_88 | 0.0 | 1.0 | 0.0 |
| GMAGLGJH_99 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GMAGLGJH_15 | 1011 | 12756 | False | Siphoviridae | VOG5562, VOG6795, VOG5998, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG4967, VOG6450, VOG10867, VOG0181, VOG10059, VOG8520, VOG0862 |
| GMAGLGJH_23 | 82676 | 93425 | False | Siphoviridae | VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606, VOG4632, VOG1581 |
| GMAGLGJH_28 | 19186 | 28702 | False | Siphoviridae | VOG4602, VOG6495, VOG5353, VOG4552, VOG0181, VOG10867, VOG4600, VOG1309, VOG11003, VOG4566, VOG0189, VOG7363, VOG5998, VOG5562 |
Phigaro v2.4.0 (Database: Jan. 2024 release)