Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HBDMLFKH_1 | 60868 | 60164 | WalR | 2.28e-111 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HBDMLFKH_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HBDMLFKH_1 | 15900 | 17868 | False | Siphoviridae | VOG9667, VOG2820, VOG4643 |
| HBDMLFKH_1 | 459635 | 489321 | False | Siphoviridae | VOG1637, VOG0648, VOG3498, VOG4763, VOG4633, VOG4545, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG0519, VOG4841, VOG0198, VOG1563, VOG1298, VOG0982, VOG0189, VOG4799, VOG3642, VOG10867, VOG0181, VOG4552, VOG5353, VOG6495, VOG4602 |
| HBDMLFKH_1 | 881143 | 891321 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204 |
| HBDMLFKH_1 | 1041242 | 1063148 | False | Siphoviridae | VOG3795, VOG4649, VOG0602, VOG7017, VOG0861, VOG7896, VOG6455, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1329, VOG4555, VOG5616, VOG4564, VOG0720, VOG4544, VOG3699 |
| HBDMLFKH_1 | 1921733 | 1947391 | False | Siphoviridae | VOG0198, VOG4694, VOG4694, VOG6579, VOG4570, VOG4549, VOG4841, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852, VOG6163, VOG4605, VOG4599, VOG4705, VOG0861, VOG7017, VOG0703, VOG4918 |
| HBDMLFKH_1 | 2261044 | 2271151 | False | Siphoviridae | VOG3643, VOG0044, VOG1563, VOG0198, VOG0321, VOG0283, VOG0514, VOG0226, VOG4799, VOG0025, VOG7735, VOG7018, VOG0536, VOG0195, VOG0275, VOG4643, VOG5532 |
| HBDMLFKH_1 | 3025013 | 3040103 | True | Siphoviridae | VOG4643, VOG0275, VOG0195, VOG9759, VOG0327, VOG4606, VOG6545, VOG3777, VOG4548, VOG0322, VOG0321, VOG5088, VOG5088, VOG4570, VOG4570, VOG4549, VOG5532, VOG8387 |
Phigaro v2.4.0 (Database: Jan. 2024 release)