Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OLGMLOCJ_113 | 8155 | 8649 | lnuC | ARO:3002837 | lnuC | 96.34 | 100.00 | AY928180.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OLGMLOCJ_113 | 8155 | 8649 | lnu(C) | Lincomycin | 98.59 | 100.00 | AY928180 |
| OLGMLOCJ_1 | 64 | 661 | blaTEM-116 | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin | 100.00 | 69.45 | AY425988 |
| OLGMLOCJ_1 | 64 | 661 | blaTEM-181 | Unknown Beta-lactam | 100.00 | 69.45 | KM977568 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OLGMLOCJ_113 | 8158 | 8649 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 96.34 | 100.00 | WP_063851341.1 |
| OLGMLOCJ_1 | 67 | 660 | blaTEM | TEM family class A beta-lactamase | PARTIAL_CONTIG_ENDX | 100.00 | 69.23 | WP_000027050.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OLGMLOCJ_32 | 32701 | 32898 | CspA | 9.73e-29 | cold shock protein | 80.30 | 100.00 | CAA62903 |
| OLGMLOCJ_32 | 32701 | 32895 | CspR | 4.22e-28 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OLGMLOCJ_11 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_22 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_32 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_43 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_54 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_61 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_70 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_80 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_89 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_99 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_100 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_102 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_103 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_104 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_105 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_106 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_107 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_108 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_109 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_110 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_111 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_112 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_113 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_114 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_115 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_116 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_117 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_118 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_119 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_120 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_121 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_122 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_123 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_124 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_125 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_126 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_127 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_128 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_129 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_130 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_131 | 1.0 | 0.0 | 1.0 |
| OLGMLOCJ_132 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_133 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_134 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_135 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_136 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_137 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_138 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_139 | 1.0 | 0.0 | 1.0 |
| OLGMLOCJ_140 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_141 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_142 | 1.0 | 0.0 | 1.0 |
| OLGMLOCJ_143 | 1.0 | 0.0 | 1.0 |
| OLGMLOCJ_144 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_145 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_146 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_148 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_149 | 1.0 | 0.0 | 1.0 |
| OLGMLOCJ_150 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_151 | 1.0 | 0.0 | 1.0 |
| OLGMLOCJ_152 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_153 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_154 | 1.0 | 0.0 | 1.0 |
| OLGMLOCJ_155 | 1.0 | 0.0 | 1.0 |
| OLGMLOCJ_156 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_157 | 1.0 | 0.0 | 1.0 |
| OLGMLOCJ_158 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_159 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_160 | 1.0 | 0.0 | 1.0 |
| OLGMLOCJ_161 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_162 | 1.0 | 0.0 | 1.0 |
| OLGMLOCJ_163 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_164 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_165 | 1.0 | 0.0 | 1.0 |
| OLGMLOCJ_166 | 1.0 | 0.0 | 1.0 |
| OLGMLOCJ_167 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_169 | 1.0 | 0.0 | 1.0 |
| OLGMLOCJ_170 | 1.0 | 0.0 | 1.0 |
| OLGMLOCJ_171 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_172 | 1.0 | 0.0 | 1.0 |
| OLGMLOCJ_173 | 1.0 | 0.0 | 1.0 |
| OLGMLOCJ_174 | 1.0 | 0.0 | 1.0 |
| OLGMLOCJ_175 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_176 | 1.0 | 0.0 | 1.0 |
| OLGMLOCJ_178 | 0.0 | 1.0 | 0.0 |
| OLGMLOCJ_189 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OLGMLOCJ_123 | 58055 | 80111 | False | Myoviridae / Siphoviridae | VOG0189, VOG5235, VOG0083, VOG0382, VOG0384, VOG0205, VOG0226, VOG6085, VOG0025, VOG8295, VOG1176, VOG10457 |
Phigaro v2.4.0 (Database: Jan. 2024 release)