Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 10 | 4 | 16.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AACHGPBI_1 | 2518674 | 2519528 | aadK | ARO:3002627 | aadK | 97.54 | 100.00 | AL009126.1 |
| AACHGPBI_1 | 2499376 | 2500578 | blt | ARO:3003006 | blt | 98.50 | 100.00 | L32599.1 |
| AACHGPBI_1 | 2315294 | 2316463 | bmr | ARO:3003007 | bmr | 99.23 | 100.00 | M33768.1 |
| AACHGPBI_1 | 1344736 | 1345053 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| AACHGPBI_1 | 1344398 | 1344736 | ykkC | ARO:3003063 | ykkC | 99.11 | 100.00 | AL009126.1 |
| AACHGPBI_1 | 885852 | 888422 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
| AACHGPBI_1 | 588937 | 590565 | vmlR | ARO:3004476 | vmlR | 95.38 | 99.09 | NC_000964.3 |
| AACHGPBI_1 | 330177 | 330770 | tmrB | ARO:3003059 | tmrB | 97.46 | 100.00 | AL009126.3 |
| AACHGPBI_1 | 279613 | 281046 | lmrB | ARO:3002813 | lmrB | 100.00 | 100.00 | JYFL01000006.1 |
| AACHGPBI_1 | 266793 | 267713 | mphK | ARO:3004541 | mphK | 98.04 | 100.00 | CP010314.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AACHGPBI_1 | 2518674 | 2519528 | aadK | Streptomycin | 98.25 | 100.00 | M26879 |
| AACHGPBI_1 | 266793 | 267713 | mph(K) | Spiramycin, Telithromycin | 97.39 | 100.00 | NC_000964 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AACHGPBI_1 | 266793 | 267710 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 98.04 | 100.00 | WP_003246254.1 |
| AACHGPBI_1 | 2518677 | 2519528 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 97.54 | 100.00 | WP_003229862.1 |
| AACHGPBI_1 | 588943 | 590565 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 95.38 | 98.90 | WP_003234144.1 |
| AACHGPBI_1 | 3995858 | 3996376 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.75 | 100.00 | WP_003242546.1 |
| AACHGPBI_1 | 2022998 | 2025595 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.29 | 100.00 | WP_087347987.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| AACHGPBI_1 | 3495422 | 3496603 | capB | 0.0 | Capsule | Immune modulation | 99.49 | 100.00 | NP_391471 |
| AACHGPBI_1 | 3494958 | 3495407 | capC | 0.0 | Capsule | Immune modulation | 99.33 | 100.00 | NP_391470 |
| AACHGPBI_1 | 3493797 | 3494939 | capA | 0.0 | Capsule | Immune modulation | 99.04 | 100.00 | NP_391469 |
| AACHGPBI_1 | 3071293 | 3072078 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.98 | 100.00 | NP_391080 |
| AACHGPBI_1 | 2115683 | 2116324 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 98.75 | 100.00 | NP_390062 |
| AACHGPBI_1 | 3067457 | 3068395 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.72 | 100.00 | NP_391077 |
| AACHGPBI_1 | 3070071 | 3071267 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.50 | 100.00 | NP_391079 |
| AACHGPBI_1 | 3060307 | 3067437 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.32 | 99.99 | NP_391076 |
| AACHGPBI_1 | 1978057 | 1979820 | dep/capD | 0.0 | Capsule | Immune modulation | 98.02 | 100.00 | NP_389723 |
| AACHGPBI_1 | 3068423 | 3070042 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.59 | 100.00 | NP_391078 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AACHGPBI_1 | 132309 | 133445 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| AACHGPBI_1 | 18599 | 19468 | pdxS | 2.99e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| AACHGPBI_1 | 1654021 | 1654797 | CodY | 3.27e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| AACHGPBI_1 | 3338923 | 3339492 | ClpP | 2.42e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AACHGPBI_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AACHGPBI_1 | 1288429 | 1314565 | False | Myoviridae | VOG4602, VOG9667, VOG3490, VOG0189, VOG4861, VOG5447, VOG0796, VOG10227, VOG4773, VOG4685, VOG0749, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG7718, VOG4705 |
Phigaro v2.4.0 (Database: Jan. 2024 release)