Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 2 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OPHJBPHK_45 | 1752 | 2561 | APH(3')-Ia | ARO:3002641 | APH(3')-Ia | 97.79 | 99.26 | BX664015.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OPHJBPHK_45 | 1752 | 2561 | aph(3')-Ia | Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin | 98.90 | 99.26 | V00359 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OPHJBPHK_45 | 1752 | 2558 | aph(3')-Ia | aminoglycoside O-phosphotransferase APH(3')-Ia | BLASTX | 99.26 | 100.00 | WP_000018329.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OPHJBPHK_1 | 379837 | 380541 | WalR | 3.18e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| OPHJBPHK_55 | 39978 | 40172 | CspR | 8.63e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| OPHJBPHK_55 | 39978 | 40175 | CspA | 1.32e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OPHJBPHK_75 | 158528 | 159463 | rep28 | 936 / 936 | 100.00 | CP005948 |
| OPHJBPHK_15 | 17078 | 18178 | repUS73 | 1101 / 1101 | 96.19 | CP002654 |
| OPHJBPHK_51 | 1857 | 2812 | repUS64 | 959 / 954 | 87.90 | JN601038 |
| OPHJBPHK_45 | 2976 | 3106 | ColRNAI | 131 / 130 | 87.02 | DQ298019 |
| OPHJBPHK_29 | 2071 | 3134 | rep38 | 1067 / 1104 | 81.63 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OPHJBPHK_1 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_2 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_3 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_4 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_5 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_6 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_7 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_8 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_9 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_10 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_11 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_12 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_13 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_14 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_15 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_16 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_17 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_18 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_19 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_20 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_21 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_22 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_23 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_24 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_25 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_26 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_27 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_28 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_29 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_30 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_31 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_32 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_33 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_34 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_35 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_36 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_37 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_38 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_39 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_40 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_41 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_42 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_43 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_44 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_45 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_46 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_47 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_48 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_49 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_50 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_51 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_52 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_53 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_54 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_55 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_56 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_57 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_58 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_59 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_60 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_61 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_62 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_63 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_64 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_65 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_66 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_67 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_68 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_69 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_70 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_71 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_72 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_73 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_74 | 1.0 | 0.0 | 1.0 |
| OPHJBPHK_75 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_84 | 0.0 | 1.0 | 0.0 |
| OPHJBPHK_90 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OPHJBPHK_2 | 42052 | 43947 | False | Unknown | VOG6495, VOG4829, VOG11003 |
| OPHJBPHK_2 | 55453 | 84177 | False | Siphoviridae | VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637, VOG0054 |
| OPHJBPHK_33 | 9185 | 39007 | False | Siphoviridae | VOG0322, VOG0514, VOG4566, VOG0189, VOG6005, VOG9671, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4545, VOG4605, VOG4599, VOG10957, VOG8870 |
Phigaro v2.4.0 (Database: Jan. 2024 release)