Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 4 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HPDOKCGG_1 | 1900832 | 1899681 | tufA | 0.0 | elongation factor Tu | 86.20 | 97.21 | AHM69299 |
| HPDOKCGG_1 | 1951299 | 1950430 | pdxS | 1.46e-150 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| HPDOKCGG_1 | 845005 | 844229 | CodY | 2.34e-126 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| HPDOKCGG_1 | 845005 | 844229 | codY | 7.17e-123 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| HPDOKCGG_1 | 1212966 | 1213535 | ClpP | 1.41e-102 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HPDOKCGG_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HPDOKCGG_1 | 4324 | 36498 | False | Myoviridae | VOG1878, VOG0997, VOG4600, VOG4600, VOG1309, VOG1309, VOG5617, VOG6440, VOG5324, VOG8445, VOG5447, VOG0796, VOG7407, VOG1912, VOG4564, VOG1915, VOG1915, VOG2779, VOG1942, VOG4710, VOG1353, VOG1881, VOG1883, VOG1352, VOG1352, VOG4699, VOG5793, VOG6163, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG7013 |
| HPDOKCGG_1 | 50559 | 80288 | False | Myoviridae | VOG1309, VOG5617, VOG6440, VOG5324, VOG8445, VOG5447, VOG3699, VOG7407, VOG1912, VOG5027, VOG1915, VOG1942, VOG1942, VOG4710, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG5793, VOG4526, VOG6163, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG7013 |
Phigaro v2.4.0 (Database: Jan. 2024 release)