Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 2 | 6 | 6.63 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EIJMBHOK_1 | 703653 | 705029 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 86.56 | 100.00 | X08034 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EIJMBHOK_1 | 703653 | 705023 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
| EIJMBHOK_1 | 702923 | 703441 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 80.35 | 100.00 | WP_003242546.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| EIJMBHOK_11 | 492884 | 494065 | capB | 0.0 | Capsule | Immune modulation | 82.38 | 99.66 | NP_391471 |
| EIJMBHOK_11 | 494080 | 494529 | capC | 1.72e-117 | Capsule | Immune modulation | 84.03 | 99.78 | NP_391470 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EIJMBHOK_15 | 34184 | 33048 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| EIJMBHOK_18 | 4335 | 5204 | pdxS | 8.76e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| EIJMBHOK_1 | 1603458 | 1602682 | CodY | 2.45e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| EIJMBHOK_1 | 256461 | 256853 | spxA1 | 4.48e-69 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| EIJMBHOK_12 | 326061 | 326258 | CspA | 2.27e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| EIJMBHOK_12 | 326061 | 326255 | CspR | 2.98e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| EIJMBHOK_11 | 860174 | 861046 | lipA (SAUSA300_0829) | 3.22e-162 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EIJMBHOK_1 | 0.0 | 1.0 | 0.0 |
| EIJMBHOK_2 | 0.0 | 1.0 | 0.0 |
| EIJMBHOK_11 | 0.0 | 1.0 | 0.0 |
| EIJMBHOK_12 | 0.0 | 1.0 | 0.0 |
| EIJMBHOK_13 | 0.0 | 1.0 | 0.0 |
| EIJMBHOK_14 | 0.0 | 1.0 | 0.0 |
| EIJMBHOK_15 | 0.0 | 1.0 | 0.0 |
| EIJMBHOK_16 | 0.0 | 1.0 | 0.0 |
| EIJMBHOK_17 | 1.0 | 0.0 | 1.0 |
| EIJMBHOK_18 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EIJMBHOK_1 | 576713 | 603982 | False | Siphoviridae | VOG2752, VOG7372, VOG6340, VOG0198, VOG0376, VOG2545, VOG3691, VOG0531, VOG4581, VOG1886, VOG4556, VOG4568, VOG4553, VOG5361, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG4660, VOG4612, VOG3390, VOG7896, VOG0641, VOG4707 |
| EIJMBHOK_1 | 1986340 | 2011309 | False | Myoviridae | VOG0753, VOG4705, VOG3390, VOG7718, VOG4862, VOG4691, VOG4550, VOG3894, VOG4885, VOG4865, VOG6163, VOG3892, VOG3891, VOG3890, VOG10055, VOG0749, VOG4685, VOG4773, VOG10227, VOG0796, VOG5447, VOG4861 |
| EIJMBHOK_17 | 8565 | 31841 | False | Siphoviridae | VOG2797, VOG5532, VOG6581, VOG0198, VOG5447, VOG0796, VOG0691, VOG0692, VOG9317, VOG4572, VOG2621, VOG5007, VOG0695, VOG0696, VOG0697, VOG6548, VOG2621, VOG10044, VOG0701, VOG6163, VOG6163, VOG4605, VOG4599, VOG7779, VOG0641, VOG4707 |
Phigaro v2.4.0 (Database: Jan. 2024 release)