Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LFAPGCDE_83 | 69857 | 70561 | WalR | 8.05e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| LFAPGCDE_72 | 24848 | 25042 | CspR | 7.57e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LFAPGCDE_72 | 24848 | 25045 | CspA | 1.16e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LFAPGCDE_85 | 565 | 1500 | rep28 | 936 / 936 | 100.00 | CP005948 |
| LFAPGCDE_98 | 1586 | 2686 | repUS73 | 1101 / 1101 | 95.46 | CP002654 |
| LFAPGCDE_81 | 2659 | 3203 | rep38 | 550 / 903 | 89.45 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LFAPGCDE_2 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_3 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_4 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_5 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_11 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_22 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_31 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_32 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_33 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_34 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_35 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_36 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_37 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_38 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_39 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_40 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_41 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_42 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_43 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_44 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_45 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_46 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_47 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_48 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_49 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_50 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_51 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_52 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_53 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_54 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_55 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_56 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_57 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_58 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_59 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_60 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_61 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_62 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_63 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_64 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_65 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_66 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_67 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_68 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_69 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_70 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_71 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_72 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_73 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_74 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_75 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_76 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_77 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_78 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_79 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_80 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_81 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_82 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_83 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_84 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_85 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_86 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_87 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_88 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_89 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_90 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_91 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_92 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_93 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_94 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_95 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_96 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_97 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_98 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_99 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_100 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_101 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_102 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_103 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_104 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_105 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_106 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_107 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_108 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_109 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_110 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_111 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_112 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_114 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_115 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_116 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_117 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_118 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_119 | 0.0 | 1.0 | 0.0 |
| LFAPGCDE_120 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_121 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_122 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_123 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_124 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_125 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_126 | 1.0 | 0.0 | 1.0 |
| LFAPGCDE_127 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LFAPGCDE_36 | 5859 | 8108 | False | Unknown | VOG3547, VOG8615, VOG6139, VOG2786, VOG9667 |
| LFAPGCDE_46 | 2566 | 26528 | False | Siphoviridae | VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870 |
| LFAPGCDE_51 | 8974 | 19811 | False | Siphoviridae | VOG0701, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG0796, VOG1183, VOG5616 |
Phigaro v2.4.0 (Database: Jan. 2024 release)