Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JOMHLJFA_64 | 76192 | 75488 | WalR | 8.07e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| JOMHLJFA_25 | 67010 | 66816 | CspR | 4.05e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| JOMHLJFA_25 | 67010 | 66813 | CspA | 6.22e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JOMHLJFA_107 | 565 | 1500 | rep28 | 936 / 936 | 100.00 | CP005948 |
| JOMHLJFA_85 | 1586 | 2686 | repUS73 | 1101 / 1101 | 95.46 | CP002654 |
| JOMHLJFA_72 | 2659 | 3203 | rep38 | 550 / 903 | 89.45 | CP005943 |
| JOMHLJFA_104 | 3 | 596 | repUS64 | 598 / 954 | 84.95 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JOMHLJFA_1 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_11 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_22 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_23 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_24 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_25 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_26 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_27 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_28 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_29 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_30 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_31 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_32 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_33 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_34 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_35 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_36 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_37 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_38 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_39 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_40 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_41 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_42 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_43 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_44 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_45 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_46 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_47 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_48 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_49 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_50 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_51 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_52 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_53 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_54 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_55 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_56 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_57 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_58 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_59 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_60 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_61 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_62 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_63 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_64 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_65 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_66 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_67 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_68 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_69 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_70 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_71 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_72 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_73 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_74 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_75 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_76 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_77 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_78 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_79 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_80 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_81 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_82 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_83 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_84 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_85 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_86 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_87 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_88 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_89 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_90 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_91 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_92 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_93 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_94 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_95 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_96 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_97 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_99 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_100 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_101 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_102 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_103 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_104 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_105 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_106 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_107 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_108 | 0.0 | 1.0 | 0.0 |
| JOMHLJFA_109 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_111 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_112 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_113 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_115 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_116 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_117 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_118 | 1.0 | 0.0 | 1.0 |
| JOMHLJFA_119 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JOMHLJFA_29 | 64282 | 66531 | False | Siphoviridae | VOG4602, VOG9667, VOG2786, VOG6139, VOG8615, VOG3547 |
| JOMHLJFA_39 | 2407 | 26369 | False | Siphoviridae | VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870 |
| JOMHLJFA_44 | 3538 | 14375 | False | Siphoviridae | VOG5616, VOG1183, VOG0796, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548 |
Phigaro v2.4.0 (Database: Jan. 2024 release)