Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DCOBPBBO_66 | 26323 | 27027 | WalR | 2.48e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| DCOBPBBO_88 | 15808 | 16002 | CspR | 1.16e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| DCOBPBBO_88 | 15808 | 16005 | CspA | 1.77e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DCOBPBBO_133 | 3461 | 4396 | rep28 | 936 / 936 | 97.76 | CP005948 |
| DCOBPBBO_10 | 1640 | 2521 | rep38 | 882 / 903 | 97.39 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DCOBPBBO_1 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_2 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_3 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_4 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_5 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_6 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_7 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_8 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_9 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_10 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_11 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_12 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_13 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_14 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_15 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_16 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_17 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_18 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_19 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_20 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_21 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_22 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_23 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_24 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_25 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_26 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_27 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_28 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_29 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_30 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_31 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_32 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_33 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_34 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_35 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_36 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_38 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_39 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_40 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_41 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_42 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_43 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_44 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_46 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_55 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_59 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_60 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_61 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_62 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_63 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_64 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_65 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_66 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_67 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_68 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_69 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_70 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_71 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_72 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_73 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_74 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_75 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_76 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_77 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_78 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_79 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_80 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_81 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_82 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_83 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_84 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_85 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_86 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_87 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_88 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_89 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_90 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_91 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_92 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_93 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_94 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_95 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_96 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_97 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_98 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_99 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_100 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_101 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_102 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_103 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_104 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_105 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_106 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_107 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_108 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_109 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_110 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_111 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_112 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_113 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_114 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_115 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_116 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_117 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_118 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_119 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_120 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_121 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_122 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_123 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_124 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_125 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_126 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_127 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_128 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_129 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_130 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_131 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_132 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_133 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_134 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_135 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_136 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_137 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_138 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_139 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_140 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_141 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_142 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_143 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_144 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_145 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_146 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_147 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_148 | 1.0 | 0.0 | 1.0 |
| DCOBPBBO_149 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_150 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_151 | 0.0 | 1.0 | 0.0 |
| DCOBPBBO_152 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DCOBPBBO_69 | 16537 | 39147 | False | Siphoviridae | VOG0686, VOG3699, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG4619, VOG4856, VOG9640, VOG0804, VOG7896 |
| DCOBPBBO_141 | 4309 | 37227 | False | Siphoviridae | VOG0181, VOG0685, VOG0283, VOG0226, VOG0514, VOG8647, VOG0189, VOG0824, VOG4693, VOG0195, VOG0044, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG8239, VOG0207, VOG4586, VOG0209, VOG5904, VOG4605, VOG4599, VOG10957, VOG8870, VOG10016 |
Phigaro v2.4.0 (Database: Jan. 2024 release)