Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NJLOBCLA_1 | 87810 | 87106 | WalR | 9.39e-115 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| NJLOBCLA_41 | 51679 | 51485 | CspR | 9.28e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| NJLOBCLA_41 | 51679 | 51482 | CspA | 1.42e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NJLOBCLA_28 | 356 | 1309 | repUS64 | 954 / 954 | 97.80 | JN601038 |
| NJLOBCLA_8 | 13516 | 14416 | rep38 | 901 / 903 | 95.12 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NJLOBCLA_1 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_2 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_3 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_4 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_5 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_6 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_7 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_8 | 1.0 | 0.0 | 1.0 |
| NJLOBCLA_9 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_10 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_11 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_12 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_13 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_14 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_15 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_16 | 1.0 | 0.0 | 1.0 |
| NJLOBCLA_17 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_18 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_19 | 1.0 | 0.0 | 1.0 |
| NJLOBCLA_20 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_21 | 1.0 | 0.0 | 1.0 |
| NJLOBCLA_22 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_23 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_24 | 1.0 | 0.0 | 1.0 |
| NJLOBCLA_25 | 1.0 | 0.0 | 1.0 |
| NJLOBCLA_27 | 1.0 | 0.0 | 1.0 |
| NJLOBCLA_28 | 1.0 | 0.0 | 1.0 |
| NJLOBCLA_30 | 1.0 | 0.0 | 1.0 |
| NJLOBCLA_31 | 1.0 | 0.0 | 1.0 |
| NJLOBCLA_32 | 1.0 | 0.0 | 1.0 |
| NJLOBCLA_33 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_34 | 1.0 | 0.0 | 1.0 |
| NJLOBCLA_40 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_41 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_42 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_43 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_44 | 0.0 | 1.0 | 0.0 |
| NJLOBCLA_45 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NJLOBCLA_11 | 143233 | 153993 | False | Siphoviridae | VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| NJLOBCLA_40 | 87687 | 113704 | False | Siphoviridae | VOG0198, VOG4581, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG0083, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998 |
| NJLOBCLA_44 | 67916 | 101278 | False | Siphoviridae | VOG0713, VOG0054, VOG1637, VOG8294, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4599, VOG4633, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG1183, VOG0143, VOG0198, VOG6970, VOG5883, VOG10015, VOG4693, VOG0189, VOG4855, VOG0186, VOG1309, VOG0650 |
Phigaro v2.4.0 (Database: Jan. 2024 release)