Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JPFLBCKH_79 | 44068 | 43364 | WalR | 7.54e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| JPFLBCKH_44 | 153559 | 153365 | CspR | 8.80e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| JPFLBCKH_44 | 153559 | 153362 | CspA | 1.35e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JPFLBCKH_23 | 1289 | 2218 | rep28 | 930 / 930 | 96.88 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JPFLBCKH_1 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_2 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_3 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_4 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_5 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_6 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_7 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_8 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_9 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_10 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_11 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_12 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_13 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_14 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_15 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_16 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_17 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_18 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_19 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_20 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_21 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_22 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_23 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_24 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_25 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_26 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_27 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_28 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_29 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_30 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_31 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_32 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_33 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_34 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_35 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_36 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_37 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_38 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_39 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_40 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_41 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_42 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_43 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_44 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_45 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_46 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_47 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_48 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_49 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_50 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_52 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_53 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_54 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_55 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_56 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_57 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_58 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_59 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_60 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_61 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_62 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_63 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_65 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_66 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_67 | 1.0 | 0.0 | 1.0 |
| JPFLBCKH_77 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_79 | 0.0 | 1.0 | 0.0 |
| JPFLBCKH_80 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JPFLBCKH_2 | 1297 | 32537 | False | Siphoviridae | VOG0804, VOG9640, VOG4856, VOG4619, VOG3463, VOG4619, VOG0801, VOG4910, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4555, VOG0692, VOG0691, VOG4544, VOG0796, VOG0686, VOG0198, VOG3643, VOG0044, VOG3480, VOG4693, VOG4552, VOG4566, VOG0186, VOG1309 |
| JPFLBCKH_12 | 9342 | 33645 | False | Siphoviridae | VOG0283, VOG0226, VOG10904, VOG0514, VOG8647, VOG0189, VOG11024, VOG4693, VOG0822, VOG0044, VOG4010, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163 |
| JPFLBCKH_22 | 5833 | 23759 | False | Siphoviridae | VOG9667, VOG4602, VOG4040, VOG10653, VOG0275, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609 |
| JPFLBCKH_80 | 95444 | 117917 | False | Siphoviridae | VOG9998, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG6163, VOG0725, VOG0799, VOG0724, VOG5660, VOG4713, VOG1329, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG5709, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)