Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AEPPHBEJ_1 | 7562 | 6858 | WalR | 6.57e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| AEPPHBEJ_3 | 32155 | 32349 | CspR | 4.16e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| AEPPHBEJ_3 | 32155 | 32352 | CspA | 6.39e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| AEPPHBEJ_32 | 6278 | 7213 | rep28 | 936 / 936 | 100.00 | CP005948 |
| AEPPHBEJ_25 | 11483 | 12522 | rep38 | 1042 / 1104 | 88.58 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AEPPHBEJ_1 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_2 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_3 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_4 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_5 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_6 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_7 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_8 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_9 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_10 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_11 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_12 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_13 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_14 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_15 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_16 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_17 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_18 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_19 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_20 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_21 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_22 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_23 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_24 | 1.0 | 0.0 | 1.0 |
| AEPPHBEJ_25 | 1.0 | 0.0 | 1.0 |
| AEPPHBEJ_26 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_27 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_28 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_29 | 1.0 | 0.0 | 1.0 |
| AEPPHBEJ_30 | 1.0 | 0.0 | 1.0 |
| AEPPHBEJ_31 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_32 | 1.0 | 0.0 | 1.0 |
| AEPPHBEJ_33 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_34 | 1.0 | 0.0 | 1.0 |
| AEPPHBEJ_35 | 1.0 | 0.0 | 1.0 |
| AEPPHBEJ_36 | 1.0 | 0.0 | 1.0 |
| AEPPHBEJ_37 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_39 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_41 | 1.0 | 0.0 | 1.0 |
| AEPPHBEJ_42 | 1.0 | 0.0 | 1.0 |
| AEPPHBEJ_43 | 1.0 | 0.0 | 1.0 |
| AEPPHBEJ_44 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_45 | 1.0 | 0.0 | 1.0 |
| AEPPHBEJ_46 | 1.0 | 0.0 | 1.0 |
| AEPPHBEJ_54 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_55 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_56 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_57 | 0.0 | 1.0 | 0.0 |
| AEPPHBEJ_58 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AEPPHBEJ_8 | 16813 | 44404 | False | Siphoviridae | VOG0634, VOG0044, VOG3643, VOG0198, VOG4841, VOG0468, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4545, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998, VOG8294 |
| AEPPHBEJ_22 | 150439 | 179831 | False | Siphoviridae | VOG1637, VOG8294, VOG9531, VOG4619, VOG0801, VOG4910, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4572, VOG4555, VOG0692, VOG0691, VOG4544, VOG0796, VOG0638, VOG0143, VOG0198, VOG3643, VOG0044, VOG4693, VOG4566 |
| AEPPHBEJ_55 | 23591 | 56965 | False | Siphoviridae | VOG4602, VOG8520, VOG1563, VOG4552, VOG8222, VOG8925, VOG0321, VOG4548, VOG10904, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0195, VOG3643, VOG4673, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG8917 |
Phigaro v2.4.0 (Database: Jan. 2024 release)